Variant report

Variant	rs2616186
Chromosome Location	chr8:20724468-20724469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:20724387..20726387-chr8:20728763..20730962,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11989385	1.00[CHB][hapmap]
rs12542154	0.80[EUR][1000 genomes]
rs17093416	1.00[CHB][hapmap]
rs17093418	1.00[CHB][hapmap]
rs2616171	0.85[EUR][1000 genomes]
rs2616200	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28719733	0.89[EUR][1000 genomes]
rs4961391	0.83[EUR][1000 genomes]
rs4961404	1.00[CHB][hapmap]
rs6586941	0.80[EUR][1000 genomes]
rs6586945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6988688	0.89[EUR][1000 genomes]
rs6992184	0.86[EUR][1000 genomes]
rs7002145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71512791	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv831257	chr8:20610436-20767433	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1021366	chr8:20624387-20726669	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv539525	chr8:20624387-20726669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1020160	chr8:20652610-20825810	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv539526	chr8:20652610-20825810	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1024612	chr8:20665835-20837761	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv539527	chr8:20665835-20837761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv890645	chr8:20708335-20762512	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv890646	chr8:20714686-20843176	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20723000-20724800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:20723200-20725000	Enhancers	NH-A	brain
3	chr8:20723200-20725800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:20723400-20724600	Enhancers	HSMM	muscle
5	chr8:20723400-20724800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:20723400-20724800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:20723600-20724800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:20723800-20724600	Enhancers	HSMMtube	muscle
9	chr8:20723800-20725400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:20724000-20724600	Enhancers	Brain Anterior Caudate	brain
11	chr8:20724000-20725200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr8:20724000-20725200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:20724000-20725400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:20724200-20724600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:20724200-20724600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:20724200-20724800	Enhancers	Spleen	Spleen
17	chr8:20724200-20725400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr8:20724200-20725400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr8:20724200-20725600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:20724400-20724800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:20724400-20725000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr8:20724400-20725200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr8:20724400-20725400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links