Variant report

Variant	rs2616615
Chromosome Location	chr10:28602475-28602476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12098410	0.84[ASN][1000 genomes]
rs703015	0.82[ASN][1000 genomes]
rs786392	0.82[ASN][1000 genomes]
rs786397	0.82[ASN][1000 genomes]
rs786399	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28592800-28606600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:28593000-28607600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:28593200-28603000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:28593200-28605800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:28593200-28615400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:28593400-28613400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:28593400-28615200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:28594000-28606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:28596800-28618800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:28597200-28605400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:28597200-28611000	Weak transcription	Pancreas	Pancrea
12	chr10:28597400-28606200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:28597400-28614000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr10:28597600-28613800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:28601600-28615400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:28602000-28603000	Weak transcription	Primary T cells from cord blood	blood
17	chr10:28602000-28605800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:28602000-28615200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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