Variant report

Variant	rs12098410
Chromosome Location	chr10:28595840-28595841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28590374..28593337-chr10:28595037..28598622,5	MCF-7	breast:
2	chr10:28593200..28596095-chr10:28620526..28622698,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10826432	0.82[ASN][1000 genomes]
rs10826438	0.81[EUR][1000 genomes]
rs10826439	0.81[EUR][1000 genomes]
rs11006941	0.82[ASN][1000 genomes]
rs11006942	0.82[ASN][1000 genomes]
rs11006948	0.85[ASN][1000 genomes]
rs11006952	0.85[ASN][1000 genomes]
rs11006971	0.85[ASN][1000 genomes]
rs11006974	0.81[EUR][1000 genomes]
rs11006975	0.82[EUR][1000 genomes]
rs11006976	0.82[EUR][1000 genomes]
rs11006977	0.84[EUR][1000 genomes]
rs11006979	0.84[EUR][1000 genomes]
rs11813709	0.82[EUR][1000 genomes]
rs11814117	0.82[EUR][1000 genomes]
rs12258912	0.81[EUR][1000 genomes]
rs12358399	0.81[EUR][1000 genomes]
rs12358648	0.85[ASN][1000 genomes]
rs12359569	0.81[EUR][1000 genomes]
rs12359994	0.81[EUR][1000 genomes]
rs1418758	0.82[ASN][1000 genomes]
rs16928633	0.82[ASN][1000 genomes]
rs1840878	0.82[ASN][1000 genomes]
rs2616615	0.84[ASN][1000 genomes]
rs34130351	0.82[ASN][1000 genomes]
rs3847384	0.82[EUR][1000 genomes]
rs61845919	0.81[EUR][1000 genomes]
rs61845921	0.82[EUR][1000 genomes]
rs6481512	0.82[ASN][1000 genomes]
rs7070175	0.82[ASN][1000 genomes]
rs7072173	0.82[ASN][1000 genomes]
rs7078842	0.82[EUR][1000 genomes]
rs7084650	0.84[EUR][1000 genomes]
rs7086807	0.82[EUR][1000 genomes]
rs7086943	0.82[EUR][1000 genomes]
rs7091331	0.82[EUR][1000 genomes]
rs7100335	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7100582	0.84[EUR][1000 genomes]
rs7100983	0.84[EUR][1000 genomes]
rs7101006	0.84[EUR][1000 genomes]
rs7896797	0.82[ASN][1000 genomes]
rs7911615	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28592800-28606600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:28593000-28607600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:28593200-28597400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:28593200-28600200	Weak transcription	Psoas Muscle	Psoas
5	chr10:28593200-28603000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:28593200-28605800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr10:28593200-28615400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:28593400-28596400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:28593400-28597400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:28593400-28613400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:28593400-28615200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:28593600-28596000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:28593600-28596000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:28594000-28606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:28594200-28596200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:28595000-28597200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:28595800-28596600	Enhancers	Pancreas	Pancrea
18	chr10:28595800-28597000	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr10:28595800-28597200	Enhancers	Fetal Heart	heart
20	chr10:28595800-28597200	Enhancers	Right Ventricle	heart
21	chr10:28595800-28597400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:28595800-28597400	Enhancers	Left Ventricle	heart

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