Variant report

Variant	rs10826432
Chromosome Location	chr10:28530549-28530550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:28530407-28531288	SK-N-SH	brain:	n/a	chr10:28530906-28530924 chr10:28530907-28530923 chr10:28530901-28530922
2	CTCF	chr10:28530549-28530553	Spleen_OC	spleen:	n/a	n/a
3	RAD21	chr10:28530317-28531376	HCT-116	colon:	n/a	chr10:28530904-28530923 chr10:28530914-28530921
4	CTCF	chr10:28530451-28531232	HCT-116	colon:	n/a	chr10:28530906-28530924 chr10:28530907-28530923 chr10:28530901-28530922
5	RAD21	chr10:28530546-28531245	SK-N-SH	brain:	n/a	chr10:28530904-28530923 chr10:28530914-28530921
6	CTCF	chr10:28530189-28531292	A549	lung:	n/a	chr10:28530906-28530924 chr10:28530907-28530923 chr10:28530901-28530922
7	RAD21	chr10:28530522-28531105	H1-hESC	embryonic stem cell:	n/a	chr10:28530904-28530923 chr10:28530914-28530921
8	CTCF	chr10:28530400-28530550	NHEK	skin:	n/a	n/a
9	RAD21	chr10:28530444-28531281	HCT-116	colon:	n/a	chr10:28530904-28530923 chr10:28530914-28530921

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28529981..28531493-chr10:28533633..28535670,2	K562	blood:

Variant related genes	Relation type
MPP7	TF binding region

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10763653	0.89[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826426	0.89[CEU][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826427	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826428	0.89[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826429	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10826430	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826431	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10826439	0.83[CEU][hapmap]
rs11006921	0.84[CEU][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes]
rs11006924	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11006930	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11006931	0.89[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11006935	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006936	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006940	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11006941	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006942	1.00[ASW][hapmap];0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006948	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11006952	0.90[ASN][1000 genomes]
rs11006971	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11006975	0.82[CEU][hapmap]
rs11006976	0.84[CEU][hapmap];0.89[MEX][hapmap]
rs11006977	0.84[CEU][hapmap];0.89[MEX][hapmap]
rs11813709	0.83[CEU][hapmap]
rs11814117	0.83[CEU][hapmap]
rs12098410	0.82[ASN][1000 genomes]
rs12243871	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12243947	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12247867	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12254745	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12258617	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12263084	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12263807	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12264931	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12357214	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12357236	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12358399	0.83[CEU][hapmap]
rs12358648	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12359569	0.81[CEU][hapmap]
rs1418758	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928633	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840877	0.89[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1840878	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840879	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1892395	1.00[JPT][hapmap]
rs2100614	1.00[JPT][hapmap]
rs34130351	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847384	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs55654850	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58057536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6481511	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6481512	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481513	0.89[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6481514	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7070142	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7070175	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071331	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7072173	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072854	0.89[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7073107	0.83[CEU][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7078271	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7078842	0.84[CEU][hapmap];0.89[MEX][hapmap]
rs7081371	0.89[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7084702	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7084878	0.89[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7085924	0.94[CEU][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7086267	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7086943	0.84[CEU][hapmap]
rs7091331	0.84[CEU][hapmap]
rs7092706	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7094807	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7097351	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7100335	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.90[ASN][1000 genomes]
rs7100582	0.84[CEU][hapmap];0.89[MEX][hapmap]
rs73608074	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs74129024	0.97[ASN][1000 genomes]
rs74129028	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7893685	0.87[ASW][hapmap];0.89[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7893733	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7893878	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7893935	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7896797	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911615	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916525	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9664773	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9665710	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10826432	APBB1IP	cis	cerebellum	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28498200-28531200	Weak transcription	Primary B cells from cord blood	blood
2	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28502000-28531600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:28507400-28530600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:28507600-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:28518400-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:28519000-28552000	Weak transcription	Fetal Stomach	stomach
8	chr10:28521200-28538600	Weak transcription	Left Ventricle	heart
9	chr10:28521800-28544400	Weak transcription	Pancreas	Pancrea
10	chr10:28522000-28531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:28522400-28537000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:28523600-28531400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:28524000-28537000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:28524200-28537000	Weak transcription	Esophagus	oesophagus
15	chr10:28524400-28530600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:28524800-28536600	Weak transcription	HSMM	muscle
17	chr10:28525200-28530600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:28525800-28537000	Weak transcription	Aorta	Aorta
19	chr10:28526200-28531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:28526800-28531400	Weak transcription	Primary T cells from cord blood	blood
21	chr10:28527400-28530800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:28527400-28531000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:28527400-28531000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:28527600-28530600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:28527600-28530600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:28527600-28531000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr10:28527600-28531400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr10:28527600-28531400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:28527600-28539600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:28529000-28530600	Weak transcription	HepG2	liver
31	chr10:28529200-28530600	Weak transcription	Fetal Lung	lung
32	chr10:28529800-28530600	Weak transcription	Adipose Nuclei	Adipose
33	chr10:28530200-28530800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr10:28530200-28530800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr10:28530200-28531000	Enhancers	Hela-S3	cervix
36	chr10:28530400-28530800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr10:28530400-28530800	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr10:28530400-28530800	Enhancers	HSMMtube	muscle
39	chr10:28530400-28532000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:28530400-28532200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr10:28530400-28532600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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