Variant report

Variant	rs7893935
Chromosome Location	chr10:28502304-28502305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10763652	0.89[ASN][1000 genomes]
rs10763653	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826426	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826427	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826428	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826429	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826430	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10826431	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826432	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10826438	0.83[ASN][1000 genomes]
rs10826439	0.83[ASN][1000 genomes]
rs11006921	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11006924	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006930	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006931	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006940	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11006941	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11006942	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11006972	0.81[ASN][1000 genomes]
rs11006974	0.83[ASN][1000 genomes]
rs11006975	0.83[ASN][1000 genomes]
rs11006976	0.83[ASN][1000 genomes]
rs11006977	0.83[ASN][1000 genomes]
rs11006979	0.83[ASN][1000 genomes]
rs11006980	0.81[ASN][1000 genomes]
rs11006981	0.81[ASN][1000 genomes]
rs11006982	0.81[ASN][1000 genomes]
rs11813709	0.83[ASN][1000 genomes]
rs11814117	0.83[ASN][1000 genomes]
rs12243871	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12243947	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12247867	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12258617	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12258912	0.83[ASN][1000 genomes]
rs12263084	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12263807	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12264931	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12355677	0.81[ASN][1000 genomes]
rs12356457	0.81[ASN][1000 genomes]
rs12357214	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12357236	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12357685	0.81[ASN][1000 genomes]
rs12358399	0.83[ASN][1000 genomes]
rs12359569	0.83[ASN][1000 genomes]
rs12359994	0.83[ASN][1000 genomes]
rs1418758	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16928633	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1840877	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1840878	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1840879	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34130351	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs3847384	0.83[ASN][1000 genomes]
rs41406248	0.84[ASN][1000 genomes]
rs55654850	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58057536	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61845919	0.83[ASN][1000 genomes]
rs61845921	0.83[ASN][1000 genomes]
rs61845936	0.83[ASN][1000 genomes]
rs6481511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6481512	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6481513	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6481514	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7070142	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7070175	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7071331	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7072173	0.88[AMR][1000 genomes]
rs7072854	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7078842	0.83[ASN][1000 genomes]
rs7081371	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7084650	0.83[ASN][1000 genomes]
rs7084702	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7084878	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085924	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7086267	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7086807	0.83[ASN][1000 genomes]
rs7086943	0.83[ASN][1000 genomes]
rs7091031	0.83[ASN][1000 genomes]
rs7091331	0.83[ASN][1000 genomes]
rs7092706	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7094807	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7097351	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7100582	0.83[ASN][1000 genomes]
rs7100619	0.81[ASN][1000 genomes]
rs7100983	0.83[ASN][1000 genomes]
rs7101006	0.83[ASN][1000 genomes]
rs73608074	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74129028	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7893685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7893733	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7896797	0.88[AMR][1000 genomes]
rs7911615	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7923023	0.81[ASN][1000 genomes]
rs9664773	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9665710	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv6188	chr10:28489076-28514068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3494702	chr10:28502096-28512894	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
2	chr10:28485600-28504400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:28487600-28529000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr10:28489800-28504400	Weak transcription	Esophagus	oesophagus
5	chr10:28491200-28523200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:28492200-28504400	Weak transcription	Psoas Muscle	Psoas
7	chr10:28492200-28506800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:28492600-28506400	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:28492600-28507200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:28497400-28503800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:28497400-28506600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:28497800-28503400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:28498000-28505600	Weak transcription	HSMMtube	muscle
14	chr10:28498000-28506600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:28498200-28504400	Weak transcription	Lung	lung
16	chr10:28498200-28506600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:28498200-28531200	Weak transcription	Primary B cells from cord blood	blood
18	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:28498400-28503200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:28498400-28504000	Weak transcription	Fetal Intestine Small	intestine
21	chr10:28498400-28504400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:28499000-28505000	Weak transcription	HepG2	liver
23	chr10:28499000-28506800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:28499000-28507000	Weak transcription	Ovary	ovary
25	chr10:28499400-28503000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:28500000-28502600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:28500200-28503400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:28500400-28503200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:28500400-28506800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:28500600-28502400	Strong transcription	Primary T cells from cord blood	blood
31	chr10:28500600-28503600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:28500800-28503000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:28500800-28503000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:28500800-28503200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:28500800-28503400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:28501000-28503800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr10:28501200-28502400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr10:28501200-28503000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:28501400-28502400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:28501400-28504200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:28501400-28504200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:28501600-28502600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr10:28501800-28503200	Weak transcription	Fetal Heart	heart
44	chr10:28501800-28504400	Weak transcription	Gastric	stomach
45	chr10:28501800-28506200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr10:28502000-28504400	Weak transcription	Stomach Mucosa	stomach
47	chr10:28502000-28506400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:28502000-28531600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr10:28502200-28502400	Enhancers	H1 Cell Line	embryonic stem cell
50	chr10:28502200-28503400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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