Variant report

Variant	rs1418758
Chromosome Location	chr10:28533557-28533558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28532869..28536330-chr10:28540569..28543040,3	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10763643	1.00[JPT][hapmap]
rs10763653	0.91[CEU][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826399	1.00[JPT][hapmap]
rs10826426	0.91[CEU][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826427	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826428	0.91[CEU][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826429	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10826430	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10826431	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10826432	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826439	0.80[CEU][hapmap]
rs11006851	1.00[JPT][hapmap]
rs11006921	0.80[CEU][hapmap];0.84[AMR][1000 genomes]
rs11006924	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11006930	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11006931	0.90[CEU][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11006935	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006936	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006940	0.90[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11006941	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006942	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006948	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11006952	0.90[ASN][1000 genomes]
rs11006971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11006975	0.80[CEU][hapmap]
rs11006976	0.80[CEU][hapmap]
rs11006977	0.80[CEU][hapmap]
rs11813709	0.80[CEU][hapmap]
rs11814117	0.80[CEU][hapmap]
rs12098410	0.82[ASN][1000 genomes]
rs12243871	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12243947	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12247867	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12254745	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12258617	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12263084	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12263807	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12264931	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12357214	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12357236	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12358399	0.80[CEU][hapmap]
rs12358648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16928633	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1781837	1.00[JPT][hapmap]
rs1840877	0.91[CEU][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1840878	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840879	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1892395	1.00[JPT][hapmap]
rs1951936	1.00[JPT][hapmap]
rs2069202	1.00[JPT][hapmap]
rs2100614	1.00[JPT][hapmap]
rs2801848	1.00[JPT][hapmap]
rs2997211	1.00[JPT][hapmap]
rs34130351	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847384	0.80[CEU][hapmap];0.80[AMR][1000 genomes]
rs4749302	1.00[JPT][hapmap]
rs4749305	1.00[JPT][hapmap]
rs55654850	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58057536	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6481511	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6481512	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481513	0.91[CEU][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6481514	0.90[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7070142	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7070175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071331	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7072173	1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072480	0.80[CEU][hapmap]
rs7072854	0.91[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7073107	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7078271	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7078842	0.80[CEU][hapmap]
rs7081371	0.91[CEU][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7084702	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7084878	0.91[CEU][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7085924	0.89[CEU][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7086023	1.00[JPT][hapmap]
rs7086267	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7086943	0.80[CEU][hapmap]
rs7091331	0.80[CEU][hapmap]
rs7092706	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7094807	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7097351	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7100335	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7100582	0.80[CEU][hapmap]
rs73608074	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs74129024	0.97[ASN][1000 genomes]
rs74129028	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7893685	0.90[CEU][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7893733	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7893878	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7893935	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7894841	1.00[JPT][hapmap]
rs7896797	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904206	1.00[JPT][hapmap]
rs7907597	1.00[JPT][hapmap]
rs7911615	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916525	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7919895	1.00[JPT][hapmap]
rs9664773	0.90[CEU][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9665710	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:28519000-28552000	Weak transcription	Fetal Stomach	stomach
3	chr10:28521200-28538600	Weak transcription	Left Ventricle	heart
4	chr10:28521800-28544400	Weak transcription	Pancreas	Pancrea
5	chr10:28522400-28537000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:28524000-28537000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:28524200-28537000	Weak transcription	Esophagus	oesophagus
8	chr10:28524800-28536600	Weak transcription	HSMM	muscle
9	chr10:28525800-28537000	Weak transcription	Aorta	Aorta
10	chr10:28527600-28539600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:28531800-28536800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:28531800-28537000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:28532200-28535200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:28532400-28535000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:28532400-28536600	Weak transcription	HMEC	breast
16	chr10:28532400-28536800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:28532400-28541200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:28532600-28535000	Weak transcription	Primary T cells from cord blood	blood
19	chr10:28532800-28534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:28532800-28535200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr10:28532800-28537000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:28533200-28533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:28533200-28534800	Weak transcription	Primary monocytes fromperipheralblood	blood

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