Variant report

Variant	rs7916525
Chromosome Location	chr10:28527917-28527918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:28527875-28527925	HEK293	kidney:	embryo
2	chr10:28527875-28527925	AoSMC	blood vessel:	n/a
3	chr10:28527875-28527925	GM12892	blood:	n/a
4	chr10:28527875-28527925	T-47D	breast:	n/a
5	chr10:28527875-28527925	PFSK-1	brain:	n/a
6	chr10:28527875-28527925	HCM	heart:	n/a
7	chr10:28527875-28527925	HCPEpiC	choroid plexus:	n/a
8	chr10:28527875-28527925	HRPEpiC	eye:	n/a
9	chr10:28527875-28527925	HepG2	liver:	n/a
10	chr10:28527875-28527925	HMEC	breast:	n/a
11	chr10:28527875-28527925	IMR90	lung:	fetal
12	chr10:28527875-28527925	NT2-D1	testis:	n/a
13	chr10:28527875-28527925	NHDF-neo	bronchial:	n/a
14	chr10:28527875-28527925	HCF	heart:	n/a
15	chr10:28527875-28527925	GM12891	blood:	n/a
16	chr10:28527875-28527925	PANC-1	pancreas:	n/a
17	chr10:28527875-28527925	HEEpiC	esophagus:	n/a
18	chr10:28527875-28527925	LNCaP	prostate:	n/a
19	chr10:28527875-28527925	BJ	skin:	n/a
20	chr10:28527875-28527925	Jurkat	blood:	n/a
21	chr10:28527875-28527925	GM19239	blood:	n/a
22	chr10:28527875-28527925	AG09309	skin:	n/a
23	chr10:28527875-28527925	AG09319	gingival:	n/a
24	chr10:28527875-28527925	AG10803	skin:	n/a
25	chr10:28527875-28527925	ProgFib	skin:	n/a
26	chr10:28527875-28527925	HRCEpiC	kidney:	n/a
27	chr10:28527875-28527925	NB4	blood:	n/a
28	chr10:28527875-28527925	HCT-116	colon:	n/a
29	chr10:28527875-28527925	SK-N-SH_RA	brain:	n/a
30	chr10:28527875-28527925	SAEC	small airway:	n/a
31	chr10:28527875-28527925	BE2_C	brain:	n/a
32	chr10:28527875-28527925	SK-N-MC	brain:	n/a
33	chr10:28527875-28527925	AG04450	lung:	fetal
34	chr10:28527875-28527925	AG04449	skin:	fetal
35	chr10:28527875-28527925	HRE	kidney:	n/a
36	chr10:28527875-28527925	RPTEC	kidney:	n/a
37	chr10:28527875-28527925	H1-hESC	embryonic stem cell:	embryo
38	chr10:28527875-28527925	HL-60	blood:	n/a
39	chr10:28527875-28527925	ovcar-3	ovarian:	n/a
40	chr10:28527875-28527925	CMK	blood:	n/a
41	chr10:28527875-28527925	Hepatocyte	liver:	n/a
42	chr10:28527875-28527925	NHBE	bronchial:	n/a
43	chr10:28527875-28527925	SK-N-SH	brain:	n/a
44	chr10:28527875-28527925	GM06990	blood:	n/a
45	chr10:28527875-28527925	PrEC	prostate:	n/a
46	chr10:28527875-28527925	HIPEpiC	eye:	n/a
47	chr10:28527875-28527925	SKMC	muscle:	n/a
48	chr10:28527875-28527925	Caco-2	colon:	n/a
49	chr10:28527875-28527925	U87	brain:	n/a
50	chr10:28527875-28527925	HUVEC	blood vessel:	n/a

No data

Variant related genes	Relation type
MPP7	CpG island

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10826432	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006932	1.00[ASW][hapmap];0.81[CEU][hapmap]
rs11006935	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006942	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006948	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006952	0.94[ASN][1000 genomes]
rs11006971	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11006972	0.82[ASW][hapmap];0.87[CEU][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs11006980	0.83[AMR][1000 genomes]
rs11006981	0.82[ASW][hapmap];0.87[CEU][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs1148182	0.82[CHB][hapmap]
rs1148183	0.82[CHB][hapmap]
rs1148185	0.82[CHB][hapmap]
rs12254745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355677	0.83[AMR][1000 genomes]
rs12356457	0.83[AMR][1000 genomes]
rs12357385	0.82[ASW][hapmap];0.81[CEU][hapmap]
rs12357685	0.81[AMR][1000 genomes]
rs12358648	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1418758	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16928633	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1781830	1.00[YRI][hapmap]
rs1840878	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1892395	1.00[JPT][hapmap]
rs2100614	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2607548	0.81[CEU][hapmap]
rs2801845	0.82[ASW][hapmap];0.81[CEU][hapmap]
rs2887214	0.82[ASW][hapmap]
rs2985524	0.81[CEU][hapmap]
rs2985525	0.80[CEU][hapmap]
rs2985529	0.81[CEU][hapmap]
rs2985530	0.81[CEU][hapmap]
rs2985533	0.81[CEU][hapmap]
rs2997203	0.82[ASW][hapmap];0.81[CEU][hapmap]
rs34130351	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41406248	0.82[ASW][hapmap];0.87[CEU][hapmap];0.83[AMR][1000 genomes]
rs4747617	0.81[CEU][hapmap]
rs6481512	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6481514	0.82[TSI][hapmap]
rs7070175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7072173	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7073107	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090006	0.81[CEU][hapmap]
rs7100335	0.82[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7100619	0.82[ASW][hapmap];0.87[CEU][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs74129024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896797	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7903957	0.82[ASW][hapmap];0.81[CEU][hapmap]
rs7911615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914949	0.82[ASW][hapmap];0.81[CEU][hapmap]
rs7923023	0.82[ASW][hapmap];0.87[CEU][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs9664773	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28487600-28529000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:28498200-28531200	Weak transcription	Primary B cells from cord blood	blood
3	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:28502000-28531600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:28507200-28528600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:28507400-28530600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:28507600-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:28510800-28530400	Weak transcription	HSMMtube	muscle
9	chr10:28511000-28528800	Weak transcription	Fetal Heart	heart
10	chr10:28515600-28528000	Weak transcription	Gastric	stomach
11	chr10:28516800-28530400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:28518400-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:28519000-28552000	Weak transcription	Fetal Stomach	stomach
14	chr10:28519800-28528800	Weak transcription	Fetal Intestine Large	intestine
15	chr10:28521200-28538600	Weak transcription	Left Ventricle	heart
16	chr10:28521800-28529800	Weak transcription	Fetal Intestine Small	intestine
17	chr10:28521800-28544400	Weak transcription	Pancreas	Pancrea
18	chr10:28522000-28531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:28522400-28537000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:28523400-28530400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr10:28523600-28531400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:28523800-28529000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:28524000-28537000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:28524200-28528600	Weak transcription	HepG2	liver
25	chr10:28524200-28537000	Weak transcription	Esophagus	oesophagus
26	chr10:28524400-28530600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:28524800-28536600	Weak transcription	HSMM	muscle
28	chr10:28525200-28528000	Weak transcription	Spleen	Spleen
29	chr10:28525200-28530600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:28525800-28537000	Weak transcription	Aorta	Aorta
31	chr10:28526200-28531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:28526800-28531400	Weak transcription	Primary T cells from cord blood	blood
33	chr10:28527400-28530800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:28527400-28531000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:28527400-28531000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:28527600-28528600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:28527600-28530600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:28527600-28530600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:28527600-28531000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:28527600-28531400	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr10:28527600-28531400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:28527600-28539600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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