Variant report

Variant	rs12254745
Chromosome Location	chr10:28511507-28511508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28505448..28507000-chr10:28508709..28511532,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10826432	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11006935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006936	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11006948	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11006952	0.94[ASN][1000 genomes]
rs11006971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1148182	0.82[CHB][hapmap]
rs1148183	0.82[CHB][hapmap]
rs1148185	0.82[CHB][hapmap]
rs12358648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1418758	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16928633	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1781830	0.82[CEU][hapmap]
rs1840878	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1892395	1.00[JPT][hapmap]
rs1951936	1.00[JPT][hapmap]
rs2100614	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2607548	0.82[CEU][hapmap]
rs2801845	0.82[CEU][hapmap]
rs2887214	0.82[CEU][hapmap]
rs2985524	0.82[CEU][hapmap]
rs2985525	0.82[CEU][hapmap]
rs2985529	0.82[CEU][hapmap]
rs2985530	0.82[CEU][hapmap]
rs2985533	0.82[CEU][hapmap]
rs2997203	0.82[CEU][hapmap]
rs2997208	0.82[CEU][hapmap]
rs34130351	0.97[ASN][1000 genomes]
rs4747617	0.82[CEU][hapmap]
rs6481512	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7070175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7072173	0.97[ASN][1000 genomes]
rs7073107	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100335	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs74129024	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896797	0.97[ASN][1000 genomes]
rs7903957	0.82[CEU][hapmap]
rs7907597	1.00[JPT][hapmap]
rs7911615	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7914949	0.82[CEU][hapmap]
rs7916525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv6188	chr10:28489076-28514068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3494702	chr10:28502096-28512894	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3494704	chr10:28502496-28512794	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3494700	chr10:28502799-28512747	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3314296	chr10:28502956-28512061	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3314308	chr10:28502956-28512061	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3514591	chr10:28503047-28511888	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3494699	chr10:28503097-28511918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3494701	chr10:28503107-28511884	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3494705	chr10:28503162-28511857	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3514592	chr10:28503162-28511857	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3494703	chr10:28503269-28511812	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv498723	chr10:28503272-28511810	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3494706	chr10:28503273-28511810	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv14688	chr10:28504295-28511827	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
2	chr10:28487600-28529000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:28491200-28523200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:28498200-28531200	Weak transcription	Primary B cells from cord blood	blood
5	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:28502000-28531600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:28502400-28523000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:28502400-28525000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:28503800-28515600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:28505200-28512000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:28506000-28516000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:28507200-28528600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:28507400-28516000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:28507400-28516800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:28507400-28522000	Weak transcription	Primary T cells from cord blood	blood
16	chr10:28507400-28525400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:28507400-28530600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr10:28507600-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:28509800-28524000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:28510200-28523200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:28510800-28530400	Weak transcription	HSMMtube	muscle
22	chr10:28511000-28528800	Weak transcription	Fetal Heart	heart

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