Variant report

Variant	rs7072480
Chromosome Location	chr10:28536447-28536448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28534032..28536898-chr10:28676505..28678657,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10763653	0.89[CEU][hapmap]
rs10763654	0.90[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10763655	0.90[CEU][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10763658	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10826426	0.89[CEU][hapmap]
rs10826428	0.89[CEU][hapmap]
rs10826433	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826435	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826436	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826439	0.94[CEU][hapmap]
rs11006921	0.84[CEU][hapmap]
rs11006931	0.89[CEU][hapmap]
rs11006940	0.89[CEU][hapmap]
rs11006942	0.83[CEU][hapmap]
rs11006946	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006956	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006957	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006959	0.93[ASN][1000 genomes]
rs11006962	0.92[ASN][1000 genomes]
rs11006965	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11006970	0.86[ASN][1000 genomes]
rs11006975	1.00[CEU][hapmap]
rs11006976	0.94[CEU][hapmap]
rs11006977	0.94[CEU][hapmap]
rs1144513	0.81[ASN][1000 genomes]
rs1148175	0.84[ASN][1000 genomes]
rs11813709	0.94[CEU][hapmap]
rs11814117	0.94[CEU][hapmap]
rs12358399	0.94[CEU][hapmap]
rs12359569	0.94[CEU][hapmap]
rs12359994	0.84[CEU][hapmap]
rs1418757	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418758	0.80[CEU][hapmap]
rs1418759	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16928633	0.84[CEU][hapmap]
rs17758855	0.92[ASN][1000 genomes]
rs1840877	0.89[CEU][hapmap]
rs1870097	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1870098	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1953322	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1953324	0.91[ASN][1000 genomes]
rs2085471	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2100615	0.92[ASN][1000 genomes]
rs2100616	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2290701	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3847384	0.94[CEU][hapmap]
rs61845911	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6481513	0.89[CEU][hapmap]
rs6481514	0.89[CEU][hapmap]
rs6481515	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7070175	0.81[CEU][hapmap]
rs7072854	0.89[CEU][hapmap]
rs7078842	0.94[CEU][hapmap]
rs7081371	0.89[CEU][hapmap]
rs7084878	0.89[CEU][hapmap]
rs7085924	0.87[CEU][hapmap]
rs7086943	0.94[CEU][hapmap]
rs7088465	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7091331	0.94[CEU][hapmap]
rs7100582	0.94[CEU][hapmap]
rs7893304	0.80[AMR][1000 genomes]
rs7893685	0.89[CEU][hapmap]
rs7911615	0.84[CEU][hapmap]
rs7913970	0.85[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9664773	0.89[CEU][hapmap]
rs9919516	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:28519000-28552000	Weak transcription	Fetal Stomach	stomach
3	chr10:28521200-28538600	Weak transcription	Left Ventricle	heart
4	chr10:28521800-28544400	Weak transcription	Pancreas	Pancrea
5	chr10:28522400-28537000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:28524000-28537000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:28524200-28537000	Weak transcription	Esophagus	oesophagus
8	chr10:28524800-28536600	Weak transcription	HSMM	muscle
9	chr10:28525800-28537000	Weak transcription	Aorta	Aorta
10	chr10:28527600-28539600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:28531800-28536800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:28531800-28537000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:28532400-28536600	Weak transcription	HMEC	breast
14	chr10:28532400-28536800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:28532400-28541200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:28532800-28537000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:28535400-28536800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:28535400-28537000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:28535600-28537000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:28535600-28538200	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:28535800-28541200	Weak transcription	Psoas Muscle	Psoas
22	chr10:28535800-28551600	Weak transcription	Fetal Intestine Small	intestine
23	chr10:28536000-28537000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:28536200-28536600	Weak transcription	Primary T cells from cord blood	blood
25	chr10:28536200-28537200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr10:28536400-28537000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:28536400-28537000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:28536400-28537800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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