Variant report

Variant	rs10763658
Chromosome Location	chr10:28589839-28589840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28548955..28550637-chr10:28589374..28591919,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1004270	0.86[ASN][1000 genomes]
rs10763654	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10763655	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10763656	0.83[ASN][1000 genomes]
rs10763657	0.86[ASN][1000 genomes]
rs10763659	0.86[ASN][1000 genomes]
rs10826433	0.85[ASN][1000 genomes]
rs10826435	0.86[ASN][1000 genomes]
rs10826436	0.84[ASN][1000 genomes]
rs10826449	0.86[ASN][1000 genomes]
rs10826450	0.85[ASN][1000 genomes]
rs11006946	0.86[ASN][1000 genomes]
rs11006956	0.86[ASN][1000 genomes]
rs11006957	0.86[ASN][1000 genomes]
rs11006959	0.80[ASN][1000 genomes]
rs11006965	0.86[ASN][1000 genomes]
rs11006970	0.85[ASN][1000 genomes]
rs11007007	0.86[ASN][1000 genomes]
rs11007008	0.86[ASN][1000 genomes]
rs1144513	0.93[ASN][1000 genomes]
rs1144514	0.86[ASN][1000 genomes]
rs1148175	0.98[ASN][1000 genomes]
rs12221389	0.86[ASN][1000 genomes]
rs12221390	0.86[ASN][1000 genomes]
rs1249420	0.84[ASN][1000 genomes]
rs1418757	0.80[AMR][1000 genomes]
rs1418759	0.80[AMR][1000 genomes]
rs1870097	0.86[ASN][1000 genomes]
rs1870098	0.86[ASN][1000 genomes]
rs1953322	0.84[ASN][1000 genomes]
rs2085471	0.86[ASN][1000 genomes]
rs2100616	0.86[ASN][1000 genomes]
rs2290701	0.80[AMR][1000 genomes]
rs2368307	0.86[ASN][1000 genomes]
rs2607540	0.84[ASN][1000 genomes]
rs3847386	0.83[ASN][1000 genomes]
rs3847388	0.87[ASN][1000 genomes]
rs60705071	0.86[ASN][1000 genomes]
rs61845911	0.86[ASN][1000 genomes]
rs7072480	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7088465	0.80[AMR][1000 genomes]
rs9919403	0.87[ASN][1000 genomes]
rs9919516	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28580000-28590400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr10:28580600-28591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:28581200-28590200	Weak transcription	Fetal Heart	heart
4	chr10:28581800-28590600	Weak transcription	HMEC	breast
5	chr10:28582200-28590800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr10:28582400-28590600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:28583000-28590600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:28583200-28590800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:28584400-28590600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:28584800-28591000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:28585000-28590600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:28585200-28590200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:28585200-28590400	Weak transcription	Aorta	Aorta
14	chr10:28585400-28590400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:28585400-28590600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:28585400-28590600	Weak transcription	Psoas Muscle	Psoas
17	chr10:28585400-28590800	Weak transcription	Adipose Nuclei	Adipose
18	chr10:28585600-28590400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:28585600-28590400	Weak transcription	Fetal Intestine Large	intestine
20	chr10:28585600-28590400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:28585600-28590600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:28585600-28590600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:28585600-28590600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:28585600-28590600	Weak transcription	Stomach Mucosa	stomach
25	chr10:28585600-28590800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:28585600-28590800	Weak transcription	Fetal Stomach	stomach
27	chr10:28585600-28591000	Weak transcription	HSMMtube	muscle
28	chr10:28586000-28590600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:28586200-28590000	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:28586200-28590400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:28586800-28590400	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr10:28586800-28590600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:28587400-28590800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:28588000-28590400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:28588000-28590600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:28588200-28590800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:28588200-28590800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:28588400-28590600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:28588400-28590800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr10:28588400-28591200	Weak transcription	Small Intestine	intestine
41	chr10:28588600-28590200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:28589000-28590400	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr10:28589000-28590600	Enhancers	HepG2	liver
44	chr10:28589200-28590400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:28589400-28590000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:28589400-28590000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:28589400-28590200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:28589400-28590400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr10:28589400-28590600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:28589800-28590000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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