Variant report

Variant	rs10763655
Chromosome Location	chr10:28556495-28556496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28550629..28558294-chr10:28588558..28593348,8	MCF-7	breast:
2	chr10:28555334..28557134-chr10:28559032..28561052,2	K562	blood:
3	chr10:28554627..28557349-chr10:28572149..28574726,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1004270	0.81[ASN][1000 genomes]
rs10763654	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10763658	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10763659	0.81[ASN][1000 genomes]
rs10826425	0.91[JPT][hapmap]
rs10826433	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10826435	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10826436	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10826439	0.85[CEU][hapmap]
rs10826449	0.95[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10826450	0.81[ASN][1000 genomes]
rs11006946	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11006950	0.83[JPT][hapmap]
rs11006956	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11006957	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11006959	0.85[ASN][1000 genomes]
rs11006962	0.84[ASN][1000 genomes]
rs11006965	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11006970	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11006975	0.84[CEU][hapmap]
rs11006976	0.81[CEU][hapmap]
rs11006977	0.81[CEU][hapmap]
rs11006992	0.82[JPT][hapmap]
rs11006995	0.82[JPT][hapmap]
rs11007007	0.81[ASN][1000 genomes]
rs11007008	0.81[ASN][1000 genomes]
rs1144513	0.87[ASN][1000 genomes]
rs1144514	0.81[ASN][1000 genomes]
rs1148175	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11813709	0.80[CEU][hapmap]
rs11814117	0.80[CEU][hapmap]
rs12221389	0.81[ASN][1000 genomes]
rs12221390	0.81[ASN][1000 genomes]
rs12256403	0.86[CHB][hapmap]
rs12358399	0.85[CEU][hapmap]
rs12359569	0.83[CEU][hapmap]
rs1418757	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1418759	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17758855	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1870097	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1870098	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1953322	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1953324	0.83[ASN][1000 genomes]
rs2085471	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2100615	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2100616	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2124955	0.81[CHB][hapmap]
rs2290701	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2368307	0.81[ASN][1000 genomes]
rs2607540	0.95[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs3842931	0.82[JPT][hapmap]
rs3847384	0.83[ASW][hapmap];0.81[CEU][hapmap]
rs3847388	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs60705071	0.81[ASN][1000 genomes]
rs61845911	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6481515	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7072480	0.90[CEU][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7078842	0.81[CEU][hapmap]
rs7086943	0.81[CEU][hapmap]
rs7088465	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7091331	0.81[CEU][hapmap]
rs7100582	0.81[CEU][hapmap]
rs7905490	0.86[CHB][hapmap]
rs7913970	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap]
rs9919403	0.82[ASN][1000 genomes]
rs9919516	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv6199	chr10:28555515-28563204	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10763655	MPP7	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28550400-28582600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr10:28550600-28562400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:28550600-28562600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:28550600-28563600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:28551400-28563600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:28552400-28557800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:28552800-28558200	Weak transcription	NHEK	skin
8	chr10:28552800-28559000	Weak transcription	Aorta	Aorta
9	chr10:28553000-28559200	Weak transcription	Fetal Stomach	stomach
10	chr10:28553000-28570800	Weak transcription	Esophagus	oesophagus
11	chr10:28553200-28557800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:28553200-28568400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:28553400-28569600	Weak transcription	Pancreas	Pancrea
14	chr10:28553600-28558200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr10:28553800-28563400	Weak transcription	HepG2	liver
16	chr10:28554200-28557600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:28556000-28562200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:28556000-28563400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:28556200-28557800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:28556200-28563400	Weak transcription	Primary T cells from cord blood	blood
21	chr10:28556200-28563400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:28556200-28570800	Weak transcription	Primary B cells from cord blood	blood
23	chr10:28556400-28563800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:28556400-28571000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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