Variant report

Variant	rs3847386
Chromosome Location	chr10:28594224-28594225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28568647..28570429-chr10:28592300..28594787,2	MCF-7	breast:
2	chr10:28592349..28594987-chr10:28608964..28610998,2	MCF-7	breast:
3	chr10:28592763..28594772-chr10:28599041..28600985,2	MCF-7	breast:
4	chr10:28593200..28596095-chr10:28620526..28622698,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222374	Chromatin interaction
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10763656	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10763657	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10763658	0.83[ASN][1000 genomes]
rs10826444	0.82[EUR][1000 genomes]
rs10826445	0.91[ASN][1000 genomes]
rs10826446	0.91[ASN][1000 genomes]
rs11006989	0.91[ASN][1000 genomes]
rs11006992	0.91[ASN][1000 genomes]
rs11006995	0.91[ASN][1000 genomes]
rs11006998	0.91[ASN][1000 genomes]
rs11006999	0.91[ASN][1000 genomes]
rs11007010	0.81[ASN][1000 genomes]
rs1148175	0.81[ASN][1000 genomes]
rs12218294	0.91[ASN][1000 genomes]
rs3842931	0.91[ASN][1000 genomes]
rs3843586	0.82[ASN][1000 genomes]
rs3847387	0.93[ASN][1000 genomes]
rs4604776	0.91[ASN][1000 genomes]
rs57441879	0.93[ASN][1000 genomes]
rs7901835	0.91[ASN][1000 genomes]
rs7902785	0.85[ASN][1000 genomes]
rs7915405	0.87[ASN][1000 genomes]
rs7916067	0.91[ASN][1000 genomes]
rs7916711	0.91[ASN][1000 genomes]
rs7916740	0.91[ASN][1000 genomes]
rs7918097	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28592600-28595800	Weak transcription	Right Ventricle	heart
2	chr10:28592800-28595200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:28592800-28606600	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:28593000-28607600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:28593200-28594800	Bivalent Enhancer	Primary B cells from cord blood	blood
6	chr10:28593200-28595000	Enhancers	HepG2	liver
7	chr10:28593200-28595800	Weak transcription	Pancreas	Pancrea
8	chr10:28593200-28597400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:28593200-28600200	Weak transcription	Psoas Muscle	Psoas
10	chr10:28593200-28603000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:28593200-28605800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:28593200-28615400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:28593400-28594400	Weak transcription	Fetal Intestine Large	intestine
14	chr10:28593400-28596400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:28593400-28597400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:28593400-28613400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:28593400-28615200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:28593600-28596000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:28593600-28596000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:28594000-28595200	Enhancers	Adipose Nuclei	Adipose
21	chr10:28594000-28606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:28594200-28595000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr10:28594200-28595800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:28594200-28596200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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