Variant report

Variant	rs7902785
Chromosome Location	chr10:28592284-28592285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:28591323-28592495	H1-neurons	neurons:	n/a	n/a
2	ELF1	chr10:28591580-28592429	GM12878	blood:	n/a	chr10:28591906-28591918 chr10:28591922-28591934 chr10:28591958-28591970
3	JUND	chr10:28592182-28592518	H1-hESC	embryonic stem cell:	n/a	chr10:28592415-28592424
4	RAD21	chr10:28592140-28592351	HepG2	liver:	n/a	n/a
5	CTCF	chr10:28592240-28592390	AG04450	lung:	n/a	n/a
6	CTCF	chr10:28592260-28592410	NHDF-neo	bronchial:	n/a	n/a
7	GATA1	chr10:28591895-28592654	PBDE	blood:	n/a	n/a
8	CTCF	chr10:28592220-28592370	HCPEpiC	choroid plexus:	n/a	n/a
9	MYC	chr10:28591706-28592425	K562	blood:	n/a	chr10:28591998-28592008 chr10:28591963-28591973
10	CTCF	chr10:28592160-28592310	Caco-2	colon:	n/a	n/a
11	CREB1	chr10:28591581-28592389	A549	lung:	n/a	n/a
12	CTCF	chr10:28592220-28592370	Caco-2	colon:	n/a	n/a
13	TAF1	chr10:28592083-28592447	H1-hESC	embryonic stem cell:	n/a	n/a
14	CTCF	chr10:28592200-28592350	HPAF	blood vessel:	n/a	n/a
15	MAX	chr10:28592051-28592430	H1-hESC	embryonic stem cell:	n/a	n/a
16	MAX	chr10:28591384-28592488	MCF-7	breast:	n/a	chr10:28591998-28592008 chr10:28591963-28591973
17	CTCF	chr10:28592243-28592339	MCF-7	breast:	n/a	n/a
18	RAD21	chr10:28591438-28592471	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr10:28591619-28592404	HepG2	liver:	n/a	n/a
20	POLR2A	chr10:28592195-28592344	GM12878	blood:	n/a	n/a
21	MYBL2	chr10:28592132-28592594	HepG2	liver:	n/a	n/a
22	FOS	chr10:28591933-28592325	K562	blood:	n/a	chr10:28592035-28592044 chr10:28592169-28592178
23	ATF1	chr10:28591972-28592304	K562	blood:	n/a	n/a
24	POLR2A	chr10:28591493-28592488	MCF-7	breast:	n/a	n/a
25	YY1	chr10:28591528-28592395	HepG2	liver:	n/a	chr10:28591795-28591806 chr10:28591700-28591714 chr10:28591963-28591977
26	MXI1	chr10:28591818-28592344	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr10:28591499-28592590	ProgFib	skin:	n/a	n/a
28	CTCF	chr10:28592200-28592350	HepG2	liver:	n/a	n/a
29	MYC	chr10:28592185-28592367	MCF-7	breast:	n/a	n/a
30	RUNX3	chr10:28591635-28592387	GM12878	blood:	n/a	chr10:28592202-28592219
31	MAX	chr10:28591586-28592406	K562	blood:	n/a	chr10:28591998-28592008 chr10:28591963-28591973
32	RFX5	chr10:28591587-28592811	SK-N-SH	brain:	n/a	n/a
33	CTCF	chr10:28592147-28592365	Lung_OC	lung:	n/a	n/a
34	CREB1	chr10:28591887-28592328	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr10:28591533-28592348	K562	blood:	n/a	chr10:28591813-28591826 chr10:28591834-28591847 chr10:28591656-28591669
36	POLR2A	chr10:28592048-28592425	ECC-1	luminal epithelium:	n/a	n/a
37	CTCF	chr10:28592260-28592410	HRE	kidney:	n/a	n/a
38	RCOR1	chr10:28591769-28592370	Hela-S3	cervix:	n/a	n/a
39	ZNF143	chr10:28591685-28592345	H1-hESC	embryonic stem cell:	n/a	chr10:28591700-28591710 chr10:28591960-28591970 chr10:28592048-28592058
40	CTCF	chr10:28592220-28592370	AoAF	blood vessel:	n/a	n/a
41	EP300	chr10:28592112-28592335	GM12878	blood:	n/a	n/a
42	SP1	chr10:28591774-28592356	K562	blood:	n/a	chr10:28591965-28591974 chr10:28592031-28592041 chr10:28592012-28592021 chr10:28592032-28592046 chr10:28592037-28592046 chr10:28592030-28592042 chr10:28592030-28592042 chr10:28591964-28591978 chr10:28592036-28592045 chr10:28592160-28592181 chr10:28592031-28592041 chr10:28592010-28592022 chr10:28591963-28591975 chr10:28592031-28592040 chr10:28592010-28592022 chr10:28592032-28592041 chr10:28592030-28592041 chr10:28592035-28592047 chr10:28592035-28592047 chr10:28592032-28592041 chr10:28592037-28592046
43	MXI1	chr10:28591239-28592576	IMR90	lung:	n/a	n/a
44	CTCF	chr10:28592180-28592330	HPF	lung:	n/a	n/a
45	TAF1	chr10:28591588-28592477	H1-hESC	embryonic stem cell:	n/a	n/a
46	RFX5	chr10:28591684-28592419	Hela-S3	cervix:	n/a	n/a
47	ZNF143	chr10:28591865-28592444	K562	blood:	n/a	chr10:28591960-28591970 chr10:28592048-28592058
48	WRNIP1	chr10:28592051-28592409	GM12878	blood:	n/a	n/a
49	E2F6	chr10:28592145-28592312	K562	blood:	n/a	n/a
50	HEY1	chr10:28591644-28592485	HepG2	liver:	n/a	chr10:28591958-28591973 chr10:28591917-28591932 chr10:28591920-28591935 chr10:28591682-28591697

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:28592238-28592288	MCF-7	breast:	n/a
2	chr10:28592238-28592288	GM06990	blood:	n/a
3	chr10:28592238-28592288	GM12878	blood:	n/a
4	chr10:28592238-28592288	AG09309	skin:	n/a
5	chr10:28592238-28592288	HL-60	blood:	n/a
6	chr10:28592238-28592288	NHBE	bronchial:	n/a
7	chr10:28592238-28592288	SK-N-MC	brain:	n/a
8	chr10:28592238-28592288	SK-N-SH_RA	brain:	n/a
9	chr10:28592238-28592288	CMK	blood:	n/a
10	chr10:28592238-28592288	HAEpiC	amniotic membrane:	n/a
11	chr10:28592238-28592288	IMR90	lung:	fetal
12	chr10:28592238-28592288	HRE	kidney:	n/a
13	chr10:28592238-28592288	AG04450	lung:	fetal
14	chr10:28592238-28592288	AoSMC	blood vessel:	n/a
15	chr10:28592238-28592288	HepG2	liver:	n/a
16	chr10:28592238-28592288	GM12892	blood:	n/a
17	chr10:28592238-28592288	HEK293	kidney:	embryo
18	chr10:28592238-28592288	NH-A	brain:	n/a
19	chr10:28592238-28592288	HCF	heart:	n/a
20	chr10:28592238-28592288	U87	brain:	n/a
21	chr10:28592238-28592288	LNCaP	prostate:	n/a
22	chr10:28592238-28592288	SAEC	small airway:	n/a
23	chr10:28592238-28592288	HPAEpiC	pulmonary alveolar:	n/a
24	chr10:28592238-28592288	ovcar-3	ovarian:	n/a
25	chr10:28592238-28592288	HIPEpiC	eye:	n/a
26	chr10:28592238-28592288	HMEC	breast:	n/a
27	chr10:28592238-28592288	HNPCEpiC	eye:	n/a
28	chr10:28592238-28592288	ECC-1	luminal epithelium:	n/a
29	chr10:28592238-28592288	ProgFib	skin:	n/a
30	chr10:28592238-28592288	Hepatocyte	liver:	n/a
31	chr10:28592238-28592288	Jurkat	blood:	n/a
32	chr10:28592238-28592288	SK-N-SH	brain:	n/a
33	chr10:28592238-28592288	AG09319	gingival:	n/a
34	chr10:28592238-28592288	BJ	skin:	n/a
35	chr10:28592238-28592288	RPTEC	kidney:	n/a
36	chr10:28592238-28592288	AG04449	skin:	fetal
37	chr10:28592238-28592288	GM12891	blood:	n/a
38	chr10:28592238-28592288	PFSK-1	brain:	n/a
39	chr10:28592238-28592288	BE2_C	brain:	n/a
40	chr10:28592238-28592288	HUVEC	blood vessel:	n/a
41	chr10:28592238-28592288	SKMC	muscle:	n/a
42	chr10:28592238-28592288	A549	lung:	n/a
43	chr10:28592238-28592288	NHDF-neo	bronchial:	n/a
44	chr10:28592238-28592288	HRCEpiC	kidney:	n/a
45	chr10:28592238-28592288	GM19239	blood:	n/a
46	chr10:28592238-28592288	NT2-D1	testis:	n/a
47	chr10:28592238-28592288	Caco-2	colon:	n/a
48	chr10:28592238-28592288	PrEC	prostate:	n/a
49	chr10:28592238-28592288	AG10803	skin:	n/a
50	chr10:28592238-28592288	HCPEpiC	choroid plexus:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:28592071..28593938-chr10:28656842..28659307,2	MCF-7	breast:
2	chr10:28558711..28561125-chr10:28592241..28593804,2	MCF-7	breast:
3	chr10:28570371..28575406-chr10:28590076..28593528,7	MCF-7	breast:
4	chr10:28591768..28592588-chr11:102962835..102963365,2	HCT-116	colon:
5	chr10:28590710..28592646-chr10:28598868..28601462,3	MCF-7	breast:

Variant related genes	Relation type
MPP7	TF binding region
MPP7	CpG island
ENSG00000150054	Chromatin interaction
ENSG00000137692	Chromatin interaction
ENSG00000222374	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10763656	0.81[ASN][1000 genomes]
rs10763657	0.87[ASN][1000 genomes]
rs10826445	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826446	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006923	0.90[AMR][1000 genomes]
rs11006927	0.86[AMR][1000 genomes]
rs11006928	0.90[AMR][1000 genomes]
rs11006933	0.90[AMR][1000 genomes]
rs11006939	0.86[AMR][1000 genomes]
rs11006947	0.86[AMR][1000 genomes]
rs11006950	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006954	0.93[AMR][1000 genomes]
rs11006958	0.90[AMR][1000 genomes]
rs11006960	0.93[AMR][1000 genomes]
rs11006989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006990	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs11006992	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006994	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs11006995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006997	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs11006998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006999	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11007000	0.98[AMR][1000 genomes]
rs11007003	0.83[AMR][1000 genomes]
rs11007004	0.81[AMR][1000 genomes]
rs11007006	0.83[AMR][1000 genomes]
rs12218294	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570440	0.95[AMR][1000 genomes]
rs1984853	0.83[AMR][1000 genomes]
rs2368306	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs35016093	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs3842931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3843586	0.80[ASN][1000 genomes]
rs3847386	0.85[ASN][1000 genomes]
rs3847387	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4598572	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs4604776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57441879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7901835	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7903242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915405	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7916067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7916711	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7916740	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28589800-28592800	Active TSS	Stomach Smooth Muscle	stomach
2	chr10:28590400-28592800	Active TSS	Aorta	Aorta
3	chr10:28590600-28592600	Active TSS	Brain Anterior Caudate	brain
4	chr10:28590600-28592600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:28590600-28592600	Active TSS	Colonic Mucosa	Colon
6	chr10:28590800-28592400	Active TSS	Brain Angular Gyrus	brain
7	chr10:28590800-28592600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr10:28590800-28592600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:28590800-28592600	Active TSS	Brain Germinal Matrix	brain
10	chr10:28590800-28592600	Active TSS	Right Ventricle	heart
11	chr10:28590800-28592800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:28590800-28592800	Active TSS	Fetal Stomach	stomach
13	chr10:28590800-28592800	Active TSS	Right Atrium	heart
14	chr10:28590800-28593000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr10:28590800-28593200	Active TSS	H1 Cell Line	embryonic stem cell
16	chr10:28591000-28592400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:28591000-28592400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:28591000-28592400	Active TSS	Brain Hippocampus Middle	brain
19	chr10:28591000-28592400	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr10:28591000-28592400	Active TSS	Gastric	stomach
21	chr10:28591000-28592400	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr10:28591000-28592600	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr10:28591000-28592600	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr10:28591000-28592600	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr10:28591000-28592600	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr10:28591000-28592600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:28591000-28592600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:28591000-28592600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr10:28591000-28592600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:28591000-28592600	Active TSS	Brain Cingulate Gyrus	brain
31	chr10:28591000-28592600	Active TSS	Esophagus	oesophagus
32	chr10:28591000-28592600	Active TSS	Fetal Muscle Trunk	muscle
33	chr10:28591000-28592600	Active TSS	Left Ventricle	heart
34	chr10:28591000-28592600	Active TSS	Ovary	ovary
35	chr10:28591000-28592600	Active TSS	Placenta Amnion	Placenta Amnion
36	chr10:28591000-28592800	Active TSS	H9 Cell Line	embryonic stem cell
37	chr10:28591000-28592800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:28591000-28592800	Active TSS	Fetal Intestine Large	intestine
39	chr10:28591000-28592800	Active TSS	Fetal Intestine Small	intestine
40	chr10:28591000-28592800	Active TSS	Pancreas	Pancrea
41	chr10:28591000-28592800	Active TSS	Psoas Muscle	Psoas
42	chr10:28591000-28593000	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr10:28591000-28593000	Active TSS	Rectal Smooth Muscle	rectum
44	chr10:28591200-28592400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:28591200-28592400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:28591200-28592400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr10:28591200-28592400	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr10:28591200-28592400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:28591200-28592400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:28591200-28592400	Active TSS	Colon Smooth Muscle	Colon

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