Variant report

Variant	rs7915405
Chromosome Location	chr10:28591499-28591500
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28570371..28575406-chr10:28590076..28593528,7	MCF-7	breast:
2	chr10:28590710..28592646-chr10:28598868..28601462,3	MCF-7	breast:
3	chr10:28548955..28550637-chr10:28589374..28591919,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222374	Chromatin interaction
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10763656	0.89[ASN][1000 genomes]
rs10763657	0.89[ASN][1000 genomes]
rs10826445	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10826446	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006950	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11006989	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006990	0.83[AMR][1000 genomes]
rs11006992	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006994	0.83[AMR][1000 genomes]
rs11006995	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006997	0.83[AMR][1000 genomes]
rs11006998	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006999	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11007000	0.83[AMR][1000 genomes]
rs11007010	0.81[ASN][1000 genomes]
rs12218294	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12570440	0.81[AMR][1000 genomes]
rs2368306	0.83[AMR][1000 genomes]
rs35016093	0.83[AMR][1000 genomes]
rs3842931	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3843586	0.82[ASN][1000 genomes]
rs3847386	0.87[ASN][1000 genomes]
rs3847387	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4598572	0.83[AMR][1000 genomes]
rs4604776	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57441879	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7901835	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7902785	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7903242	0.85[AMR][1000 genomes]
rs7916067	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7916711	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7916740	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28589800-28592800	Active TSS	Stomach Smooth Muscle	stomach
2	chr10:28590400-28592800	Active TSS	Aorta	Aorta
3	chr10:28590600-28592600	Active TSS	Brain Anterior Caudate	brain
4	chr10:28590600-28592600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:28590600-28592600	Active TSS	Colonic Mucosa	Colon
6	chr10:28590800-28591600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
7	chr10:28590800-28591800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:28590800-28592400	Active TSS	Brain Angular Gyrus	brain
9	chr10:28590800-28592600	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr10:28590800-28592600	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:28590800-28592600	Active TSS	Brain Germinal Matrix	brain
12	chr10:28590800-28592600	Active TSS	Right Ventricle	heart
13	chr10:28590800-28592800	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:28590800-28592800	Active TSS	Fetal Stomach	stomach
15	chr10:28590800-28592800	Active TSS	Right Atrium	heart
16	chr10:28590800-28593000	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr10:28590800-28593200	Active TSS	H1 Cell Line	embryonic stem cell
18	chr10:28591000-28592200	Active TSS	HepG2	liver
19	chr10:28591000-28592400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:28591000-28592400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:28591000-28592400	Active TSS	Brain Hippocampus Middle	brain
22	chr10:28591000-28592400	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr10:28591000-28592400	Active TSS	Gastric	stomach
24	chr10:28591000-28592400	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr10:28591000-28592600	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr10:28591000-28592600	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr10:28591000-28592600	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr10:28591000-28592600	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr10:28591000-28592600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:28591000-28592600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:28591000-28592600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr10:28591000-28592600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:28591000-28592600	Active TSS	Brain Cingulate Gyrus	brain
34	chr10:28591000-28592600	Active TSS	Esophagus	oesophagus
35	chr10:28591000-28592600	Active TSS	Fetal Muscle Trunk	muscle
36	chr10:28591000-28592600	Active TSS	Left Ventricle	heart
37	chr10:28591000-28592600	Active TSS	Ovary	ovary
38	chr10:28591000-28592600	Active TSS	Placenta Amnion	Placenta Amnion
39	chr10:28591000-28592800	Active TSS	H9 Cell Line	embryonic stem cell
40	chr10:28591000-28592800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:28591000-28592800	Active TSS	Fetal Intestine Large	intestine
42	chr10:28591000-28592800	Active TSS	Fetal Intestine Small	intestine
43	chr10:28591000-28592800	Active TSS	Pancreas	Pancrea
44	chr10:28591000-28592800	Active TSS	Psoas Muscle	Psoas
45	chr10:28591000-28593000	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr10:28591000-28593000	Active TSS	Rectal Smooth Muscle	rectum
47	chr10:28591200-28591600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:28591200-28591600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:28591200-28591800	Weak transcription	Stomach Mucosa	stomach
50	chr10:28591200-28592200	Active TSS	Primary hematopoietic stem cells	blood

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