Variant report

Variant	rs7916067
Chromosome Location	chr10:28588032-28588033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28563819..28566589-chr10:28585546..28588280,2	MCF-7	breast:
2	chr10:28580079..28588330-chr10:28588541..28593496,9	MCF-7	breast:
3	chr10:28580424..28583414-chr10:28585033..28588040,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10763656	0.87[ASN][1000 genomes]
rs10763657	0.93[ASN][1000 genomes]
rs10826445	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826446	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006923	0.90[AMR][1000 genomes]
rs11006927	0.86[AMR][1000 genomes]
rs11006928	0.90[AMR][1000 genomes]
rs11006933	0.90[AMR][1000 genomes]
rs11006939	0.86[AMR][1000 genomes]
rs11006947	0.86[AMR][1000 genomes]
rs11006950	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11006954	0.93[AMR][1000 genomes]
rs11006958	0.90[AMR][1000 genomes]
rs11006960	0.93[AMR][1000 genomes]
rs11006989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006990	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs11006992	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006994	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs11006995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006997	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs11006998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006999	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11007000	0.98[AMR][1000 genomes]
rs11007003	0.83[AMR][1000 genomes]
rs11007004	0.81[AMR][1000 genomes]
rs11007006	0.83[AMR][1000 genomes]
rs11007010	0.85[ASN][1000 genomes]
rs12218186	0.82[ASN][1000 genomes]
rs12218294	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12570440	0.95[AMR][1000 genomes]
rs1984853	0.83[AMR][1000 genomes]
rs2368306	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs35016093	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs3842931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3843586	0.86[ASN][1000 genomes]
rs3847386	0.91[ASN][1000 genomes]
rs3847387	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4598572	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs4604776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57441879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7901835	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7903242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7915405	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7916711	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916740	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28579000-28588400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr10:28580000-28590400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr10:28580600-28591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:28581200-28590200	Weak transcription	Fetal Heart	heart
5	chr10:28581800-28590600	Weak transcription	HMEC	breast
6	chr10:28582200-28590800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr10:28582400-28590600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:28583000-28589000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:28583000-28590600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:28583200-28590800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:28584200-28589400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:28584400-28590600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:28584800-28591000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:28585000-28590600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:28585200-28590200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:28585200-28590400	Weak transcription	Aorta	Aorta
17	chr10:28585400-28590400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:28585400-28590600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:28585400-28590600	Weak transcription	Psoas Muscle	Psoas
20	chr10:28585400-28590800	Weak transcription	Adipose Nuclei	Adipose
21	chr10:28585600-28590400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:28585600-28590400	Weak transcription	Fetal Intestine Large	intestine
23	chr10:28585600-28590400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:28585600-28590600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:28585600-28590600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:28585600-28590600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:28585600-28590600	Weak transcription	Stomach Mucosa	stomach
28	chr10:28585600-28590800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:28585600-28590800	Weak transcription	Fetal Stomach	stomach
30	chr10:28585600-28591000	Weak transcription	HSMMtube	muscle
31	chr10:28585800-28589200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:28586000-28590600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr10:28586200-28589000	Weak transcription	HepG2	liver
34	chr10:28586200-28589800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:28586200-28590000	Weak transcription	Colon Smooth Muscle	Colon
36	chr10:28586200-28590400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr10:28586400-28589200	Weak transcription	Primary T cells from cord blood	blood
38	chr10:28586800-28590400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr10:28586800-28590600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:28587400-28588600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr10:28587400-28590800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:28587600-28589400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr10:28587800-28588200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr10:28587800-28588200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:28587800-28588400	Enhancers	Small Intestine	intestine
46	chr10:28588000-28588400	Enhancers	Primary T cells fromperipheralblood	blood
47	chr10:28588000-28588800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:28588000-28590400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr10:28588000-28590600	Weak transcription	Duodenum Mucosa	Duodenum

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