Variant report

Variant	rs2618064
Chromosome Location	chr11:76068467-76068468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76067003..76068670-chr11:76071732..76073278,2	K562	blood:
2	chr11:76063211..76065578-chr11:76066828..76069387,3	K562	blood:
3	chr11:76066083..76068514-chr11:76079264..76081458,2	K562	blood:
4	chr11:76063211..76065578-chr11:76066978..76069387,2	K562	blood:

Variant related genes	Relation type
ENSG00000137492	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236718	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2226895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618092	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2851147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851154	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851473	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851475	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851477	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3824908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76054600-76080600	Weak transcription	Psoas Muscle	Psoas
2	chr11:76056800-76080600	Weak transcription	Small Intestine	intestine
3	chr11:76058800-76071400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:76059000-76082000	Weak transcription	HMEC	breast
5	chr11:76060200-76069000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:76062600-76079200	Weak transcription	Stomach Mucosa	stomach
7	chr11:76063000-76069400	Weak transcription	Fetal Brain Male	brain
8	chr11:76063000-76077000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:76063600-76068800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:76064000-76068600	Strong transcription	Fetal Thymus	thymus
11	chr11:76064800-76072400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:76065600-76069400	Strong transcription	HSMM	muscle
13	chr11:76065800-76068600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:76066000-76069800	Strong transcription	K562	blood
15	chr11:76066000-76071800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr11:76066000-76073800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:76066000-76077600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:76066200-76068600	Strong transcription	NHDF-Ad	bronchial
19	chr11:76066200-76079400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:76066200-76085800	Weak transcription	Esophagus	oesophagus
21	chr11:76066400-76068800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr11:76066400-76072400	Strong transcription	Hela-S3	cervix
23	chr11:76066400-76077000	Weak transcription	Fetal Heart	heart
24	chr11:76066400-76079600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:76066400-76089200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:76066400-76090000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:76066600-76072400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:76066600-76074400	Weak transcription	Brain Germinal Matrix	brain
29	chr11:76066600-76074800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:76066600-76076000	Weak transcription	Thymus	Thymus
31	chr11:76066600-76076800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:76066600-76080600	Weak transcription	Spleen	Spleen
33	chr11:76066600-76082000	Weak transcription	Right Ventricle	heart
34	chr11:76066600-76082000	Weak transcription	NH-A	brain
35	chr11:76066600-76090000	Weak transcription	Fetal Brain Female	brain
36	chr11:76066800-76074200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:76066800-76082000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:76067000-76071000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:76067000-76073400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr11:76067200-76068600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:76067200-76072400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:76067200-76072800	Weak transcription	Brain Anterior Caudate	brain
43	chr11:76067200-76077200	Weak transcription	HepG2	liver
44	chr11:76067400-76070600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:76067400-76071000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:76067400-76074800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:76067400-76076000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:76067400-76076800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:76067400-76077800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:76067400-76080600	Weak transcription	Right Atrium	heart

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