Variant report

Variant	rs2851147
Chromosome Location	chr11:76078864-76078865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236718	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2226895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2618063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2618064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2618092	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851154	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851473	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851475	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851477	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3439808	chr11:76074633-76079115	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76054600-76080600	Weak transcription	Psoas Muscle	Psoas
2	chr11:76056800-76080600	Weak transcription	Small Intestine	intestine
3	chr11:76059000-76082000	Weak transcription	HMEC	breast
4	chr11:76062600-76079200	Weak transcription	Stomach Mucosa	stomach
5	chr11:76066200-76079400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:76066200-76085800	Weak transcription	Esophagus	oesophagus
7	chr11:76066400-76079600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:76066400-76089200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:76066400-76090000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:76066600-76080600	Weak transcription	Spleen	Spleen
11	chr11:76066600-76082000	Weak transcription	Right Ventricle	heart
12	chr11:76066600-76082000	Weak transcription	NH-A	brain
13	chr11:76066600-76090000	Weak transcription	Fetal Brain Female	brain
14	chr11:76066800-76082000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:76067400-76080600	Weak transcription	Right Atrium	heart
16	chr11:76067400-76082000	Weak transcription	NHLF	lung
17	chr11:76067600-76079000	Weak transcription	Fetal Lung	lung
18	chr11:76067600-76079400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:76067600-76082000	Weak transcription	Aorta	Aorta
20	chr11:76067600-76082000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:76067600-76082000	Weak transcription	GM12878-XiMat	blood
22	chr11:76067600-76082000	Weak transcription	NHEK	skin
23	chr11:76067600-76082200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:76067600-76082400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:76067600-76085800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:76067600-76090400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:76067600-76091000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:76067800-76079200	Weak transcription	Fetal Kidney	kidney
29	chr11:76067800-76079400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:76067800-76080400	Weak transcription	Liver	Liver
31	chr11:76067800-76080400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:76067800-76082200	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:76067800-76087400	Weak transcription	Colonic Mucosa	Colon
34	chr11:76067800-76090000	Weak transcription	Lung	lung
35	chr11:76068200-76080400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:76068200-76082000	Weak transcription	HUVEC	blood vessel
37	chr11:76068400-76080000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:76068400-76080600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:76071200-76082000	Weak transcription	A549	lung
40	chr11:76071400-76079200	Weak transcription	Fetal Intestine Large	intestine
41	chr11:76071400-76082200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:76071800-76080600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:76071800-76082200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:76071800-76082400	Weak transcription	Primary T cells from cord blood	blood
45	chr11:76072200-76090400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:76072400-76079600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:76072400-76082000	Weak transcription	Hela-S3	cervix
48	chr11:76072600-76082000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:76073200-76082000	Weak transcription	Adipose Nuclei	Adipose
50	chr11:76073400-76082000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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