Variant report

Variant	rs2619202
Chromosome Location	chr19:36288297-36288298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36266545..36269722-chr19:36286322..36289805,3	K562	blood:

Variant related genes	Relation type
ENSG00000004777	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2619203	1.00[AMR][1000 genomes]
rs638087	0.81[AFR][1000 genomes]
rs7260321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
3	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv911634	chr19:36206050-36290977	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
6	nsv911636	chr19:36240960-36290977	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv911637	chr19:36261928-36309321	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
9	esv3446624	chr19:36282645-36318788	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36278400-36294400	Weak transcription	Spleen	Spleen
2	chr19:36283400-36303000	Weak transcription	Pancreas	Pancrea
3	chr19:36287600-36288400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr19:36287600-36288400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:36287600-36288400	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr19:36287600-36288800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr19:36287600-36288800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr19:36287600-36289000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr19:36287800-36288400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr19:36287800-36288400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:36287800-36288600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr19:36287800-36288600	Bivalent Enhancer	Fetal Brain Male	brain
13	chr19:36287800-36289000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr19:36287800-36289000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:36287800-36289000	Bivalent Enhancer	Placenta	Placenta
16	chr19:36288000-36288400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr19:36288000-36288400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
18	chr19:36288000-36288400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
19	chr19:36288000-36288600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr19:36288000-36288600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:36288000-36288600	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr19:36288000-36288600	Enhancers	HepG2	liver
23	chr19:36288000-36288800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
24	chr19:36288000-36288800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr19:36288000-36288800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr19:36288000-36288800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr19:36288000-36288800	Active TSS	Brain Cingulate Gyrus	brain
28	chr19:36288000-36288800	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr19:36288000-36289000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:36288000-36289000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:36288000-36289000	Active TSS	Brain Angular Gyrus	brain
32	chr19:36288200-36288400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr19:36288200-36288400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
34	chr19:36288200-36288400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr19:36288200-36288400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr19:36288200-36288400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
37	chr19:36288200-36288400	Enhancers	Brain Substantia Nigra	brain
38	chr19:36288200-36288400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
39	chr19:36288200-36288600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
40	chr19:36288200-36288600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr19:36288200-36288600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
42	chr19:36288200-36288800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
43	chr19:36288200-36288800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr19:36288200-36288800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr19:36288200-36289000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
46	chr19:36288200-36289000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
47	chr19:36288200-36289000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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