Variant report

Variant	rs262375
Chromosome Location	chr7:103453057-103453058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10953393	0.81[ASN][1000 genomes]
rs11973815	0.81[ASN][1000 genomes]
rs12531131	0.81[ASN][1000 genomes]
rs1404431	0.85[MEX][hapmap]
rs17156394	0.95[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.85[ASN][1000 genomes]
rs1963647	0.86[MEX][hapmap]
rs4729931	0.90[MEX][hapmap]
rs4729932	0.86[MEX][hapmap];0.81[ASN][1000 genomes]
rs56106813	0.86[ASN][1000 genomes]
rs58420913	0.81[ASN][1000 genomes]
rs73180201	0.86[ASN][1000 genomes]
rs73181905	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs262375	TRIM4	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103450800-103456600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:103451200-103453800	Enhancers	HepG2	liver
3	chr7:103451200-103455000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:103451600-103453200	Enhancers	K562	blood
5	chr7:103452000-103453200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:103452800-103453400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr7:103453000-103453200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr7:103453000-103453200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr7:103453000-103453600	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links