Variant report

Variant	rs17156394
Chromosome Location	chr7:103461597-103461598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103452464..103456150-chr7:103461161..103465020,4	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10215861	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs10233074	0.81[CEU][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10244283	0.86[EUR][1000 genomes]
rs10250074	0.86[EUR][1000 genomes]
rs10262803	0.81[CEU][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10266261	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs10267445	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs10272530	0.86[EUR][1000 genomes]
rs10275624	0.83[EUR][1000 genomes]
rs10276941	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs10279423	0.86[EUR][1000 genomes]
rs12534629	0.86[EUR][1000 genomes]
rs12536007	0.94[MEX][hapmap]
rs1404431	0.83[JPT][hapmap];0.81[YRI][hapmap]
rs1510855	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs1510857	0.81[CEU][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs1848959	0.81[CEU][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs1877109	0.81[CEU][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs2237636	0.83[JPT][hapmap]
rs2299393	0.81[EUR][1000 genomes]
rs2299395	0.88[MEX][hapmap]
rs262375	0.95[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.85[ASN][1000 genomes]
rs28374422	0.86[EUR][1000 genomes]
rs28417410	0.85[EUR][1000 genomes]
rs28418870	0.86[EUR][1000 genomes]
rs28513620	0.84[EUR][1000 genomes]
rs28529490	0.86[EUR][1000 genomes]
rs28628152	0.86[EUR][1000 genomes]
rs28658324	0.85[EUR][1000 genomes]
rs28710358	0.86[EUR][1000 genomes]
rs28760395	0.84[EUR][1000 genomes]
rs28803202	0.86[EUR][1000 genomes]
rs28841308	0.86[EUR][1000 genomes]
rs28880083	0.86[EUR][1000 genomes]
rs3819484	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs3819489	0.81[YRI][hapmap];0.81[ASN][1000 genomes]
rs3847070	0.82[JPT][hapmap]
rs39343	0.82[CHD][hapmap];0.80[JPT][hapmap]
rs4729931	0.83[JPT][hapmap];0.81[YRI][hapmap]
rs56106813	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56673287	0.86[EUR][1000 genomes]
rs56739105	0.86[EUR][1000 genomes]
rs57559907	0.86[EUR][1000 genomes]
rs60861793	0.86[EUR][1000 genomes]
rs67399010	0.81[ASN][1000 genomes]
rs6951263	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs73180201	0.98[ASN][1000 genomes]
rs73181905	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73181915	0.86[EUR][1000 genomes]
rs745540	0.81[ASN][1000 genomes]
rs9656085	0.94[MEX][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv523031	chr7:103457789-103470499	Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17156394	FBXL13	cis	parietal	SCAN
rs17156394	TFR2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103457800-103472000	Weak transcription	HepG2	liver
2	chr7:103461200-103482400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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