Variant report

Variant	rs67399010
Chromosome Location	chr7:103446021-103446022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:103442619..103446141-chr7:103451934..103454148,3	K562	blood:
2	chr7:103442038..103446172-chr7:103446880..103450108,3	K562	blood:
3	chr7:103444260..103446283-chr7:103446880..103450236,3	K562	blood:
4	chr7:103438609..103440758-chr7:103446017..103447792,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10953393	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11973815	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12531131	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1404431	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17156394	0.81[ASN][1000 genomes]
rs1963647	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237636	0.85[ASN][1000 genomes]
rs3819484	0.98[ASN][1000 genomes]
rs3819489	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3847070	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4729931	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4729932	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56106813	0.83[ASN][1000 genomes]
rs58420913	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58581358	0.84[ASN][1000 genomes]
rs60403171	0.95[ASN][1000 genomes]
rs60851159	0.81[ASN][1000 genomes]
rs61124913	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67342215	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67649823	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73180133	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73180201	0.82[ASN][1000 genomes]
rs73181905	0.82[ASN][1000 genomes]
rs73412894	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs745540	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs878458	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103440400-103449400	Weak transcription	K562	blood
2	chr7:103444200-103446800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:103445600-103446200	Enhancers	NHDF-Ad	bronchial
4	chr7:103446000-103446800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:103446000-103447600	Strong transcription	HepG2	liver

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