Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103409588..103414279-chr7:103419372..103424003,5	K562	blood:
2	chr7:103410814..103414279-chr7:103419372..103422608,3	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10487171	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10953393	0.85[ASN][1000 genomes]
rs11973815	0.85[ASN][1000 genomes]
rs11974819	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12531131	0.85[ASN][1000 genomes]
rs1404431	0.96[ASN][1000 genomes]
rs1963647	0.84[ASN][1000 genomes]
rs2214943	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2237636	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3819484	0.97[ASN][1000 genomes]
rs3819489	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3847070	0.94[ASN][1000 genomes]
rs4140848	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4729931	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4729932	0.85[ASN][1000 genomes]
rs58420913	0.85[ASN][1000 genomes]
rs58581358	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60851159	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61124913	0.83[ASN][1000 genomes]
rs67342215	0.95[ASN][1000 genomes]
rs67399010	0.95[ASN][1000 genomes]
rs67649823	0.96[ASN][1000 genomes]
rs73180133	0.82[ASN][1000 genomes]
rs73412894	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs745540	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs878458	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1016328	chr7:103396911-103443565	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv539048	chr7:103396911-103443565	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103390000-103434000	Weak transcription	K562	blood
2	chr7:103406000-103433600	Weak transcription	HepG2	liver
3	chr7:103413200-103418000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:103413600-103414000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:103413600-103414000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast

Quick Search: