Variant report

Variant	rs12536007
Chromosome Location	chr7:103481688-103481689
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103472175..103477480-chr7:103478652..103481731,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10215861	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10233074	0.81[CHD][hapmap];0.89[MEX][hapmap];0.81[ASN][1000 genomes]
rs10250074	0.82[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10262803	0.81[CHD][hapmap];0.89[MEX][hapmap];0.81[ASN][1000 genomes]
rs10266261	0.81[ASN][1000 genomes]
rs10267445	0.82[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs10272530	0.83[ASN][1000 genomes]
rs10275624	0.82[ASN][1000 genomes]
rs10276941	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10279423	0.81[ASN][1000 genomes]
rs12534629	0.81[ASN][1000 genomes]
rs1510855	0.81[ASN][1000 genomes]
rs1510857	0.80[CHD][hapmap];0.94[MEX][hapmap];0.81[ASN][1000 genomes]
rs17156394	0.94[MEX][hapmap]
rs17157063	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1848959	0.82[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[ASN][1000 genomes]
rs1877109	0.89[MEX][hapmap]
rs2237645	0.93[ASN][1000 genomes]
rs2299395	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28417410	0.81[ASN][1000 genomes]
rs28418870	0.81[ASN][1000 genomes]
rs28513620	1.00[ASN][1000 genomes]
rs28529490	0.81[ASN][1000 genomes]
rs28628152	0.81[ASN][1000 genomes]
rs28658324	0.81[ASN][1000 genomes]
rs28710358	0.80[ASN][1000 genomes]
rs28760395	0.95[ASN][1000 genomes]
rs28803202	0.81[ASN][1000 genomes]
rs28841308	0.81[ASN][1000 genomes]
rs28880083	0.81[ASN][1000 genomes]
rs4727575	0.91[ASN][1000 genomes]
rs56673287	0.81[ASN][1000 genomes]
rs56739105	0.81[ASN][1000 genomes]
rs57559907	0.81[ASN][1000 genomes]
rs60861793	0.81[ASN][1000 genomes]
rs6951263	0.81[ASN][1000 genomes]
rs73181912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73181915	0.81[ASN][1000 genomes]
rs9656085	0.89[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103461200-103482400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:103466600-103481800	Weak transcription	K562	blood
3	chr7:103473200-103495200	Weak transcription	HepG2	liver

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