Variant report

Variant	rs4727575
Chromosome Location	chr7:103496983-103496984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103496481..103498750-chr7:103510746..103512273,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10215861	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10233074	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10244283	0.93[AMR][1000 genomes]
rs10250074	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10262803	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10266261	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10267445	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10272530	0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10275624	0.89[AMR][1000 genomes]
rs10276941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10279423	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12534629	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12536007	0.91[ASN][1000 genomes]
rs12669883	0.89[AMR][1000 genomes]
rs1510855	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1510857	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1848959	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1877109	0.93[AMR][1000 genomes]
rs2237645	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2299393	0.92[AMR][1000 genomes]
rs28374422	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28417410	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28418870	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28513620	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28529490	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28628152	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28658324	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28710358	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28760395	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28803202	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28841308	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28880083	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4440548	0.87[AMR][1000 genomes]
rs56673287	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56739105	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57559907	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60861793	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6951263	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73181912	0.82[ASN][1000 genomes]
rs73181915	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9656085	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1030128	chr7:103489028-103517045	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103486000-103497800	Weak transcription	K562	blood
2	chr7:103496200-103497600	Weak transcription	HepG2	liver
3	chr7:103496600-103497200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:103496600-103498200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:103496800-103497000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:103496800-103497200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:103496800-103497800	Weak transcription	H1 Cell Line	embryonic stem cell

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