Variant report

Variant	rs4440548
Chromosome Location	chr7:103524902-103524903
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10215861	0.90[EUR][1000 genomes]
rs10233074	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10244283	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10250074	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10262803	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10266261	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10267445	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10272530	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10275624	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10276941	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10279423	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10953394	0.96[ASN][1000 genomes]
rs12534629	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12669883	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1510855	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1510857	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17157063	0.97[ASN][1000 genomes]
rs1848959	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1877109	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237643	0.90[ASN][1000 genomes]
rs2237645	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2237646	0.96[ASN][1000 genomes]
rs2299393	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299395	0.99[ASN][1000 genomes]
rs28374422	0.90[EUR][1000 genomes]
rs28417410	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28418870	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28513620	0.87[EUR][1000 genomes]
rs28529490	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28628152	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28658324	0.89[EUR][1000 genomes]
rs28710358	0.90[EUR][1000 genomes]
rs28760395	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28803202	0.90[EUR][1000 genomes]
rs28841308	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28880083	0.90[EUR][1000 genomes]
rs3914129	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4727575	0.87[AMR][1000 genomes]
rs56673287	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56739105	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57559907	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60861793	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6951263	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73181915	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9641319	0.98[ASN][1000 genomes]
rs9656085	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103520800-103529200	Weak transcription	HepG2	liver
2	chr7:103524200-103526800	Weak transcription	K562	blood

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