Variant report

Variant	rs2237643
Chromosome Location	chr7:103521696-103521697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10244283	0.80[ASN][1000 genomes]
rs10953394	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12669883	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs17157063	0.89[ASN][1000 genomes]
rs1877109	0.95[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2237646	0.91[ASN][1000 genomes]
rs2299393	0.86[ASN][1000 genomes]
rs2299395	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs3914129	1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs39389	0.84[EUR][1000 genomes]
rs39392	0.84[EUR][1000 genomes]
rs39395	0.96[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs39397	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs4440548	0.90[ASN][1000 genomes]
rs9641319	1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs9656085	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2237643	SLC26A5	cis	cerebellum	SCAN
rs2237643	C7orf61	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103520200-103523800	Weak transcription	K562	blood
2	chr7:103520800-103529200	Weak transcription	HepG2	liver
3	chr7:103521600-103522200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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