Variant report

Variant	rs262443
Chromosome Location	chr11:36064829-36064830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs262446	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897224	chr11:36059983-36114348	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:36052200-36069200	Weak transcription	Psoas Muscle	Psoas
4	chr11:36053600-36069600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:36055400-36068200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:36055800-36070200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:36055800-36070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:36055800-36072600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:36056000-36065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:36056200-36066800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:36056200-36070200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:36057200-36069200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:36057400-36070000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:36057400-36073800	Weak transcription	Hela-S3	cervix
15	chr11:36058800-36071200	Weak transcription	Esophagus	oesophagus
16	chr11:36058800-36074600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:36058800-36093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:36059000-36066200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:36059000-36068200	Weak transcription	Fetal Brain Female	brain
20	chr11:36059000-36073400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:36059000-36075200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:36059400-36071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:36059400-36071800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:36059400-36082000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:36059800-36065600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:36059800-36069800	Weak transcription	Fetal Intestine Small	intestine
27	chr11:36059800-36078600	Weak transcription	HSMM	muscle
28	chr11:36060200-36066200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:36060200-36071800	Weak transcription	Aorta	Aorta
30	chr11:36060200-36079400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:36060200-36087800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:36060400-36069800	Weak transcription	Ovary	ovary
33	chr11:36060400-36072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:36060400-36076200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:36061600-36069200	Weak transcription	HSMMtube	muscle
36	chr11:36061600-36070200	Weak transcription	Fetal Kidney	kidney
37	chr11:36061600-36075400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:36061800-36070800	Weak transcription	Fetal Stomach	stomach
39	chr11:36062000-36067800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:36062200-36068600	Weak transcription	Fetal Lung	lung
41	chr11:36063200-36066200	Enhancers	Brain Germinal Matrix	brain
42	chr11:36063400-36066600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:36063600-36065200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:36063600-36066600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:36063600-36087000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:36063800-36074800	Weak transcription	NHEK	skin
47	chr11:36063800-36075600	Weak transcription	NHLF	lung
48	chr11:36064000-36067800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:36064000-36068600	Weak transcription	Fetal Brain Male	brain
50	chr11:36064000-36069200	Weak transcription	Brain Cingulate Gyrus	brain

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