Variant report

Variant	rs262446
Chromosome Location	chr11:36061842-36061843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36061600..36063581-chr11:36072636..36074986,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs262443	0.82[AMR][1000 genomes]
rs262449	0.87[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34142883	0.88[EUR][1000 genomes]
rs57346912	0.88[EUR][1000 genomes]
rs7128706	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897224	chr11:36059983-36114348	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:36052200-36069200	Weak transcription	Psoas Muscle	Psoas
4	chr11:36053600-36069600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:36055400-36068200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:36055800-36070200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:36055800-36070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:36055800-36072600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:36056000-36063400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:36056000-36065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:36056200-36063600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:36056200-36066800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:36056200-36070200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:36056800-36063000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:36056800-36063200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:36057200-36069200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:36057400-36070000	Weak transcription	Fetal Intestine Large	intestine
18	chr11:36057400-36073800	Weak transcription	Hela-S3	cervix
19	chr11:36058400-36062200	Enhancers	NHLF	lung
20	chr11:36058600-36063800	Enhancers	NHDF-Ad	bronchial
21	chr11:36058800-36063600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:36058800-36063800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:36058800-36064600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:36058800-36071200	Weak transcription	Esophagus	oesophagus
25	chr11:36058800-36074600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:36058800-36093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:36059000-36063200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:36059000-36063400	Weak transcription	NHEK	skin
29	chr11:36059000-36063600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:36059000-36066200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:36059000-36068200	Weak transcription	Fetal Brain Female	brain
32	chr11:36059000-36073400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:36059000-36075200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:36059400-36063400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:36059400-36063400	Weak transcription	HMEC	breast
36	chr11:36059400-36063800	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:36059400-36071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:36059400-36071800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:36059400-36082000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr11:36059800-36062200	Enhancers	Fetal Lung	lung
41	chr11:36059800-36065600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:36059800-36069800	Weak transcription	Fetal Intestine Small	intestine
43	chr11:36059800-36078600	Weak transcription	HSMM	muscle
44	chr11:36060000-36062400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:36060000-36063200	Weak transcription	Brain Germinal Matrix	brain
46	chr11:36060200-36066200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:36060200-36071800	Weak transcription	Aorta	Aorta
48	chr11:36060200-36079400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr11:36060200-36087800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:36060400-36062600	Weak transcription	Muscle Satellite Cultured Cells	--

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