Variant report

Variant	rs2624678
Chromosome Location	chr10:44668301-44668302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44667690..44669212-chr10:44804064..44805875,2	MCF-7	breast:
2	chr10:44185118..44187930-chr10:44667702..44670061,3	MCF-7	breast:
3	chr10:44666585..44670486-chr10:44673567..44676746,4	MCF-7	breast:
4	chr10:44668076..44670399-chr10:44731878..44734290,2	MCF-7	breast:
5	chr10:44664819..44666637-chr10:44666893..44669742,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1704224	0.83[ASN][1000 genomes]
rs2802480	0.83[ASN][1000 genomes]
rs2802483	0.83[ASN][1000 genomes]
rs2802485	0.83[ASN][1000 genomes]
rs2804037	0.83[ASN][1000 genomes]
rs3912305	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44656600-44669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:44656600-44673200	Weak transcription	Right Atrium	heart
3	chr10:44658000-44668400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:44664200-44669000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:44666400-44669800	Enhancers	Pancreas	Pancrea
6	chr10:44667000-44670600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:44667400-44669800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr10:44667400-44670000	Enhancers	Fetal Heart	heart
9	chr10:44667400-44671400	Weak transcription	Right Ventricle	heart
10	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:44667600-44669800	Enhancers	Stomach Mucosa	stomach
12	chr10:44667800-44669000	Enhancers	Colon Smooth Muscle	Colon
13	chr10:44667800-44669200	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:44667800-44669600	Enhancers	Duodenum Mucosa	Duodenum
15	chr10:44667800-44669600	Enhancers	Fetal Stomach	stomach
16	chr10:44667800-44669600	Enhancers	HepG2	liver
17	chr10:44667800-44669800	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:44668200-44668600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:44668200-44668600	Enhancers	Fetal Intestine Large	intestine
20	chr10:44668200-44668600	Enhancers	Left Ventricle	heart
21	chr10:44668200-44669400	Enhancers	Small Intestine	intestine
22	chr10:44668200-44669600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:44668200-44669600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:44668200-44669600	Enhancers	Fetal Intestine Small	intestine

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