Variant report

Variant	rs2804037
Chromosome Location	chr10:44674661-44674662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1318409	1.00[JPT][hapmap]
rs1704224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1704225	0.86[AFR][1000 genomes]
rs17156166	1.00[JPT][hapmap]
rs2624678	0.83[ASN][1000 genomes]
rs2802480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3912305	1.00[ASN][1000 genomes]
rs4948874	1.00[JPT][hapmap]
rs731336	1.00[JPT][hapmap]
rs73277089	0.91[ASN][1000 genomes]
rs7897798	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
3	chr10:44669600-44674800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:44670400-44675600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
6	chr10:44670600-44675400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:44672000-44675600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:44672600-44675400	Enhancers	NHDF-Ad	bronchial
9	chr10:44673800-44675200	Weak transcription	HSMMtube	muscle
10	chr10:44673800-44675400	Weak transcription	HepG2	liver
11	chr10:44674000-44675000	Weak transcription	HSMM	muscle
12	chr10:44674600-44677400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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