Variant report

Variant	rs1704225
Chromosome Location	chr10:44677919-44677920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44677585..44679491-chr10:44682542..44684188,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10508883	0.89[ASN][1000 genomes]
rs12240324	0.89[ASN][1000 genomes]
rs12262428	0.89[ASN][1000 genomes]
rs12264354	0.90[ASN][1000 genomes]
rs12414810	0.91[ASN][1000 genomes]
rs1680637	1.00[ASN][1000 genomes]
rs1704224	0.86[AFR][1000 genomes]
rs1704227	1.00[ASN][1000 genomes]
rs17155417	0.90[ASN][1000 genomes]
rs17155440	0.92[ASN][1000 genomes]
rs17155445	0.91[ASN][1000 genomes]
rs17155514	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802480	0.86[AFR][1000 genomes]
rs2802483	0.86[AFR][1000 genomes]
rs2802485	0.86[AFR][1000 genomes]
rs2804037	0.86[AFR][1000 genomes]
rs4948613	0.91[ASN][1000 genomes]
rs4948614	0.89[ASN][1000 genomes]
rs4948858	0.89[ASN][1000 genomes]
rs74138248	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
2	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
3	chr10:44675800-44678400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:44675800-44679400	Weak transcription	Ovary	ovary
5	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:44676200-44679400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:44676200-44680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:44676200-44681800	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:44676400-44679400	Weak transcription	Adipose Nuclei	Adipose
10	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:44676600-44678400	Weak transcription	NHLF	lung
12	chr10:44676600-44678800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:44676600-44679200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:44676600-44679600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:44676800-44678400	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:44677000-44678600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:44677200-44678400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:44677200-44681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:44677400-44678400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:44677600-44678000	Weak transcription	NHDF-Ad	bronchial

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