Variant report

Variant	rs1680637
Chromosome Location	chr10:44678682-44678683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44677585..44679491-chr10:44682542..44684188,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508883	0.89[ASN][1000 genomes]
rs12240324	0.89[ASN][1000 genomes]
rs12262428	0.89[ASN][1000 genomes]
rs12264354	0.90[ASN][1000 genomes]
rs12414810	0.91[ASN][1000 genomes]
rs1704225	1.00[ASN][1000 genomes]
rs1704227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155417	0.90[ASN][1000 genomes]
rs17155440	0.92[ASN][1000 genomes]
rs17155445	0.91[ASN][1000 genomes]
rs17155514	0.99[ASN][1000 genomes]
rs4948613	0.91[ASN][1000 genomes]
rs4948614	0.89[ASN][1000 genomes]
rs4948858	0.89[ASN][1000 genomes]
rs74138248	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
2	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
3	chr10:44675800-44679400	Weak transcription	Ovary	ovary
4	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:44676200-44679400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:44676200-44680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44676200-44681800	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:44676400-44679400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:44676600-44678800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44676600-44679200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:44676600-44679600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:44677200-44681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:44678000-44680800	Enhancers	NHDF-Ad	bronchial
15	chr10:44678400-44679800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:44678400-44679800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:44678400-44680400	Enhancers	Colon Smooth Muscle	Colon
18	chr10:44678400-44680400	Enhancers	NHLF	lung
19	chr10:44678400-44682800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:44678600-44679000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
21	chr10:44678600-44679000	Enhancers	Liver	Liver
22	chr10:44678600-44680000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:44678600-44682600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links