Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44668956..44670995-chr10:44797225..44798985,2	MCF-7	breast:
2	chr10:44669470..44673256-chr10:44752953..44756762,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10508883	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12240324	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12262428	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12414810	0.97[ASN][1000 genomes]
rs1680637	0.90[ASN][1000 genomes]
rs1704225	0.90[ASN][1000 genomes]
rs1704227	0.90[ASN][1000 genomes]
rs17155417	1.00[ASN][1000 genomes]
rs17155440	0.98[ASN][1000 genomes]
rs17155445	0.97[ASN][1000 genomes]
rs17155514	0.89[ASN][1000 genomes]
rs2146808	1.00[CEU][hapmap]
rs2760672	1.00[CEU][hapmap]
rs4948613	0.97[ASN][1000 genomes]
rs4948614	0.95[ASN][1000 genomes]
rs4948858	0.96[ASN][1000 genomes]
rs702363	1.00[CEU][hapmap]
rs74138248	0.89[ASN][1000 genomes]
rs800316	1.00[CEU][hapmap]
rs800318	1.00[CEU][hapmap]
rs800320	1.00[CEU][hapmap]
rs808972	1.00[CEU][hapmap]
rs809601	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44656600-44673200	Weak transcription	Right Atrium	heart
2	chr10:44667000-44670600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:44667400-44671400	Weak transcription	Right Ventricle	heart
4	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
6	chr10:44669200-44671800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:44669400-44671600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:44669400-44671800	Weak transcription	Fetal Lung	lung
9	chr10:44669400-44672600	Weak transcription	NHDF-Ad	bronchial
10	chr10:44669600-44671000	Weak transcription	Fetal Kidney	kidney
11	chr10:44669600-44671600	Weak transcription	HepG2	liver
12	chr10:44669600-44674600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:44669600-44674800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:44670000-44671800	Weak transcription	Fetal Heart	heart
15	chr10:44670400-44675600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea

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