Variant report

Variant	rs12262428
Chromosome Location	chr10:44693901-44693902
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508883	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238910	0.83[ASN][1000 genomes]
rs11238917	0.83[ASN][1000 genomes]
rs11238920	0.81[ASN][1000 genomes]
rs12240324	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12264354	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12268863	0.85[AFR][1000 genomes]
rs12414810	0.97[ASN][1000 genomes]
rs1680637	0.89[ASN][1000 genomes]
rs1704225	0.89[ASN][1000 genomes]
rs1704227	0.89[ASN][1000 genomes]
rs17155417	0.95[ASN][1000 genomes]
rs17155440	0.97[ASN][1000 genomes]
rs17155445	0.96[ASN][1000 genomes]
rs17155514	0.89[ASN][1000 genomes]
rs17155599	0.83[ASN][1000 genomes]
rs17155606	0.83[ASN][1000 genomes]
rs2146808	1.00[CEU][hapmap]
rs2760672	1.00[CEU][hapmap]
rs4948613	0.97[ASN][1000 genomes]
rs4948614	1.00[ASN][1000 genomes]
rs4948858	0.97[ASN][1000 genomes]
rs702363	1.00[CEU][hapmap]
rs74138248	0.89[ASN][1000 genomes]
rs800316	1.00[CEU][hapmap]
rs800318	1.00[CEU][hapmap]
rs800320	1.00[CEU][hapmap]
rs808972	1.00[CEU][hapmap]
rs809601	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44691000-44694200	Weak transcription	Placenta	Placenta
4	chr10:44691400-44701200	Weak transcription	Fetal Heart	heart
5	chr10:44691600-44694800	Weak transcription	Right Ventricle	heart
6	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
7	chr10:44691800-44694400	Weak transcription	Left Ventricle	heart
8	chr10:44692000-44694400	Weak transcription	Stomach Mucosa	stomach
9	chr10:44693000-44694000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:44693000-44694400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:44693000-44694800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:44693000-44694800	Enhancers	Ovary	ovary
13	chr10:44693200-44694600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:44693200-44694800	Enhancers	Adipose Nuclei	Adipose
15	chr10:44693200-44694800	Enhancers	HSMM	muscle
16	chr10:44693200-44695000	Enhancers	Fetal Muscle Leg	muscle
17	chr10:44693400-44694200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:44693400-44694600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:44693400-44694600	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:44693400-44694600	Enhancers	NHDF-Ad	bronchial
21	chr10:44693400-44694800	Enhancers	Fetal Stomach	stomach
22	chr10:44693400-44695000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:44693400-44695400	Enhancers	HepG2	liver
24	chr10:44693600-44694800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:44693600-44694800	Enhancers	HSMMtube	muscle
26	chr10:44693800-44694000	Bivalent Enhancer	NH-A	brain
27	chr10:44693800-44694600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:44693800-44694600	Enhancers	NHLF	lung
29	chr10:44693800-44695000	Enhancers	Colon Smooth Muscle	Colon

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