Variant report

Variant	rs12268863
Chromosome Location	chr10:44690620-44690621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44689310..44690941-chr10:44794832..44796447,2	MCF-7	breast:
2	chr10:44678734..44680302-chr10:44689215..44691218,2	MCF-7	breast:
3	chr10:44684940..44686857-chr10:44689552..44691424,2	K562	blood:
4	chr10:44671351..44672873-chr10:44688913..44691046,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10508883	0.88[AFR][1000 genomes]
rs10900012	0.82[EUR][1000 genomes]
rs11815837	0.82[EUR][1000 genomes]
rs11819122	0.82[EUR][1000 genomes]
rs12249837	0.82[EUR][1000 genomes]
rs12262428	0.85[AFR][1000 genomes]
rs12264159	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12266055	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17155389	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17155453	0.82[EUR][1000 genomes]
rs17155463	0.82[EUR][1000 genomes]
rs17155474	0.82[EUR][1000 genomes]
rs17155478	0.82[EUR][1000 genomes]
rs17155512	0.82[EUR][1000 genomes]
rs55823236	0.82[EUR][1000 genomes]
rs7075227	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs74138238	0.82[EUR][1000 genomes]
rs74138240	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7893354	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7906325	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44686800-44692000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:44687000-44692000	Enhancers	Colon Smooth Muscle	Colon
3	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44688800-44692000	Enhancers	NHDF-Ad	bronchial
5	chr10:44689000-44691600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:44689400-44691600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:44689400-44692000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:44689800-44691400	Enhancers	Fetal Heart	heart
10	chr10:44690000-44691800	Enhancers	Left Ventricle	heart
11	chr10:44690200-44691200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:44690200-44691800	Enhancers	Fetal Muscle Leg	muscle
13	chr10:44690200-44692000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:44690400-44691000	Enhancers	Placenta	Placenta
15	chr10:44690400-44691000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:44690400-44691400	Enhancers	Fetal Stomach	stomach
17	chr10:44690400-44691400	Enhancers	HSMM	muscle
18	chr10:44690400-44691600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:44690400-44691600	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:44690400-44691600	Enhancers	Lung	lung
21	chr10:44690400-44691600	Enhancers	Osteobl	bone
22	chr10:44690400-44691800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:44690400-44691800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:44690400-44691800	Enhancers	Adipose Nuclei	Adipose
25	chr10:44690400-44691800	Flanking Active TSS	HepG2	liver
26	chr10:44690400-44691800	Enhancers	HSMMtube	muscle
27	chr10:44690400-44691800	Enhancers	NH-A	brain
28	chr10:44690400-44691800	Enhancers	NHLF	lung
29	chr10:44690400-44692000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:44690400-44692000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:44690400-44692000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:44690400-44692000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:44690400-44692000	Enhancers	Duodenum Mucosa	Duodenum
34	chr10:44690400-44692000	Enhancers	Fetal Intestine Small	intestine
35	chr10:44690400-44692000	Enhancers	Ovary	ovary
36	chr10:44690400-44692000	Enhancers	Stomach Mucosa	stomach
37	chr10:44690400-44692000	Enhancers	Stomach Smooth Muscle	stomach
38	chr10:44690600-44691000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:44690600-44691200	Enhancers	Fetal Muscle Trunk	muscle
40	chr10:44690600-44691600	Enhancers	Fetal Intestine Large	intestine
41	chr10:44690600-44691600	Enhancers	Right Atrium	heart
42	chr10:44690600-44691600	Enhancers	Right Ventricle	heart
43	chr10:44690600-44692000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:44690600-44692000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:44690600-44692000	Enhancers	Liver	Liver
46	chr10:44690600-44692000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr10:44690600-44692000	Enhancers	Gastric	stomach
48	chr10:44690600-44692000	Enhancers	Rectal Smooth Muscle	rectum
49	chr10:44690600-44692000	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr10:44690600-44692000	Enhancers	Skeletal Muscle Female	skeletal muscle

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