Variant report

Variant	rs74138238
Chromosome Location	chr10:44676292-44676293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44666585..44670486-chr10:44673567..44676746,4	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10900012	0.82[EUR][1000 genomes]
rs11815837	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819122	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249837	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264159	0.91[EUR][1000 genomes]
rs12266055	0.91[EUR][1000 genomes]
rs12268863	0.82[EUR][1000 genomes]
rs17155389	0.91[EUR][1000 genomes]
rs17155453	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155463	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155474	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155478	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55823236	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7075227	0.91[EUR][1000 genomes]
rs74138240	0.91[EUR][1000 genomes]
rs7893354	0.91[EUR][1000 genomes]
rs7906325	0.91[EUR][1000 genomes]
rs7919208	0.99[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
2	chr10:44670400-44682400	Weak transcription	Pancreas	Pancrea
3	chr10:44674600-44677400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:44674800-44676400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:44674800-44676400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:44675200-44676600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44675200-44677200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:44675200-44677200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:44675400-44676400	Flanking Active TSS	NHDF-Ad	bronchial
10	chr10:44675400-44676600	Enhancers	NH-A	brain
11	chr10:44675400-44676800	Enhancers	Colon Smooth Muscle	Colon
12	chr10:44675400-44677000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:44675600-44676400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:44675600-44676400	Enhancers	Adipose Nuclei	Adipose
15	chr10:44675600-44676400	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:44675800-44676400	Enhancers	HSMMtube	muscle
17	chr10:44675800-44676600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:44675800-44678400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:44675800-44679400	Weak transcription	Ovary	ovary
20	chr10:44676000-44676400	Weak transcription	NHLF	lung
21	chr10:44676000-44676400	Flanking Active TSS	Osteobl	bone
22	chr10:44676000-44676600	Enhancers	Brain Anterior Caudate	brain
23	chr10:44676000-44676600	Bivalent Enhancer	HepG2	liver
24	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:44676200-44676400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
26	chr10:44676200-44679400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:44676200-44680400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:44676200-44681800	Weak transcription	Fetal Muscle Leg	muscle

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