Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:44668956..44670995-chr10:44797225..44798985,2	MCF-7	breast:
2	chr10:44666585..44670486-chr10:44673567..44676746,4	MCF-7	breast:
3	chr10:44668076..44670399-chr10:44731878..44734290,2	MCF-7	breast:
4	chr10:44669470..44673256-chr10:44752953..44756762,5	MCF-7	breast:
5	chr10:44668858..44670394-chr10:44753194..44755475,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10900012	0.91[EUR][1000 genomes]
rs11815837	0.91[EUR][1000 genomes]
rs11819122	0.91[EUR][1000 genomes]
rs12249837	0.91[EUR][1000 genomes]
rs12266055	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268863	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17155389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155453	0.91[EUR][1000 genomes]
rs17155463	0.91[EUR][1000 genomes]
rs17155474	0.91[EUR][1000 genomes]
rs17155478	0.91[EUR][1000 genomes]
rs17155512	0.91[EUR][1000 genomes]
rs2146808	1.00[CEU][hapmap]
rs2760672	1.00[CEU][hapmap]
rs55823236	0.91[EUR][1000 genomes]
rs702363	1.00[CEU][hapmap]
rs7075227	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138238	0.91[EUR][1000 genomes]
rs74138240	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7893354	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7906325	1.00[EUR][1000 genomes]
rs800316	1.00[CEU][hapmap]
rs800318	1.00[CEU][hapmap]
rs800320	1.00[CEU][hapmap]
rs808972	1.00[CEU][hapmap]
rs809601	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44656600-44673200	Weak transcription	Right Atrium	heart
2	chr10:44667000-44670600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:44667400-44671400	Weak transcription	Right Ventricle	heart
4	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44668600-44679600	Weak transcription	Left Ventricle	heart
6	chr10:44669200-44670200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:44669200-44671800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:44669400-44671600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:44669400-44671800	Weak transcription	Fetal Lung	lung
10	chr10:44669400-44672600	Weak transcription	NHDF-Ad	bronchial
11	chr10:44669600-44670200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:44669600-44671000	Weak transcription	Fetal Kidney	kidney
13	chr10:44669600-44671600	Weak transcription	HepG2	liver
14	chr10:44669600-44674600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:44669600-44674800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:44670000-44670400	Enhancers	Pancreas	Pancrea
17	chr10:44670000-44671800	Weak transcription	Fetal Heart	heart

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