Variant report

Variant	rs800320
Chromosome Location	chr10:44798482-44798483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44795472..44799365-chr10:44803832..44806502,4	MCF-7	breast:
2	chr10:44790586..44792742-chr10:44798450..44801246,2	K562	blood:
3	chr10:44668956..44670995-chr10:44797225..44798985,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1147883	1.00[ASN][1000 genomes]
rs17156150	1.00[ASN][1000 genomes]
rs1746051	1.00[ASN][1000 genomes]
rs1746053	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146808	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs266080	1.00[ASN][1000 genomes]
rs266082	1.00[ASN][1000 genomes]
rs266083	1.00[ASN][1000 genomes]
rs2760671	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760672	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802478	1.00[ASN][1000 genomes]
rs2802479	1.00[ASN][1000 genomes]
rs34941677	1.00[ASN][1000 genomes]
rs35155049	1.00[ASN][1000 genomes]
rs35374150	1.00[ASN][1000 genomes]
rs549054	1.00[ASN][1000 genomes]
rs702363	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491034	1.00[ASN][1000 genomes]
rs768676	1.00[ASN][1000 genomes]
rs7918766	1.00[ASN][1000 genomes]
rs800309	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800316	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800318	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800324	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800327	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808972	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs809601	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs810236	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs812331	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44794400-44799000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:44797000-44799400	Weak transcription	Right Ventricle	heart
4	chr10:44797000-44801400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:44797000-44801600	Weak transcription	Psoas Muscle	Psoas
6	chr10:44797400-44801400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:44797400-44801600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:44797400-44801600	Weak transcription	Aorta	Aorta
9	chr10:44797400-44802000	Weak transcription	A549	lung
10	chr10:44797400-44806000	Weak transcription	Fetal Heart	heart
11	chr10:44797400-44806200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:44797400-44806200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:44797600-44799400	Weak transcription	NHDF-Ad	bronchial
14	chr10:44797600-44801400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:44797600-44801600	Weak transcription	NHLF	lung
16	chr10:44797800-44801400	Weak transcription	Osteobl	bone
17	chr10:44797800-44806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:44797800-44806200	Weak transcription	Pancreas	Pancrea
19	chr10:44798000-44801600	Weak transcription	NH-A	brain
20	chr10:44798000-44806000	Weak transcription	Fetal Muscle Leg	muscle

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