Variant report

Variant	rs2802478
Chromosome Location	chr10:44690235-44690236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44689310..44690941-chr10:44794832..44796447,2	MCF-7	breast:
2	chr10:44678734..44680302-chr10:44689215..44691218,2	MCF-7	breast:
3	chr10:44684940..44686857-chr10:44689552..44691424,2	K562	blood:
4	chr10:44671351..44672873-chr10:44688913..44691046,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1147883	1.00[ASN][1000 genomes]
rs17156150	1.00[ASN][1000 genomes]
rs1746051	1.00[ASN][1000 genomes]
rs1746053	1.00[ASN][1000 genomes]
rs2146808	1.00[ASN][1000 genomes]
rs266080	1.00[ASN][1000 genomes]
rs266082	1.00[ASN][1000 genomes]
rs266083	1.00[ASN][1000 genomes]
rs2760671	1.00[ASN][1000 genomes]
rs2760672	1.00[ASN][1000 genomes]
rs2802479	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34941677	1.00[ASN][1000 genomes]
rs35155049	1.00[ASN][1000 genomes]
rs35374150	1.00[ASN][1000 genomes]
rs549054	1.00[ASN][1000 genomes]
rs702363	1.00[ASN][1000 genomes]
rs71491034	1.00[ASN][1000 genomes]
rs768676	1.00[ASN][1000 genomes]
rs7918766	1.00[ASN][1000 genomes]
rs800309	1.00[ASN][1000 genomes]
rs800316	1.00[ASN][1000 genomes]
rs800318	1.00[ASN][1000 genomes]
rs800320	1.00[ASN][1000 genomes]
rs800324	1.00[ASN][1000 genomes]
rs800327	1.00[ASN][1000 genomes]
rs808972	1.00[ASN][1000 genomes]
rs809601	1.00[ASN][1000 genomes]
rs812331	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:44686800-44692000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:44687000-44692000	Enhancers	Colon Smooth Muscle	Colon
4	chr10:44687200-44690400	Weak transcription	HSMM	muscle
5	chr10:44687400-44690400	Enhancers	HepG2	liver
6	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:44688400-44690600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:44688800-44690600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:44688800-44692000	Enhancers	NHDF-Ad	bronchial
10	chr10:44689000-44690400	Weak transcription	HSMMtube	muscle
11	chr10:44689000-44690600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:44689000-44691600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:44689200-44690600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:44689400-44691600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:44689400-44692000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:44689800-44691400	Enhancers	Fetal Heart	heart
18	chr10:44690000-44690400	Bivalent Enhancer	Osteobl	bone
19	chr10:44690000-44691800	Enhancers	Left Ventricle	heart
20	chr10:44690200-44690400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:44690200-44690400	Bivalent Enhancer	NH-A	brain
22	chr10:44690200-44690600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:44690200-44691200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:44690200-44691800	Enhancers	Fetal Muscle Leg	muscle
25	chr10:44690200-44692000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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