Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:44829794..44831672-chr10:44833219..44836187,2	K562	blood:
2	chr10:44827763..44830392-chr10:44830833..44832482,2	MCF-7	breast:
3	chr10:44830042..44832187-chr10:44833219..44835318,3	K562	blood:
4	chr10:44829674..44831936-chr10:44832227..44834166,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1147883	0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs17156150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746051	1.00[ASN][1000 genomes]
rs1746053	1.00[ASN][1000 genomes]
rs2146808	1.00[ASN][1000 genomes]
rs266080	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs266082	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760671	1.00[ASN][1000 genomes]
rs2760672	1.00[ASN][1000 genomes]
rs2802478	1.00[ASN][1000 genomes]
rs2802479	1.00[ASN][1000 genomes]
rs35374150	1.00[ASN][1000 genomes]
rs549054	1.00[ASN][1000 genomes]
rs702363	1.00[ASN][1000 genomes]
rs768676	1.00[ASN][1000 genomes]
rs7918766	1.00[ASN][1000 genomes]
rs800309	1.00[ASN][1000 genomes]
rs800316	1.00[ASN][1000 genomes]
rs800318	1.00[ASN][1000 genomes]
rs800320	1.00[ASN][1000 genomes]
rs800324	1.00[ASN][1000 genomes]
rs800327	1.00[ASN][1000 genomes]
rs808972	1.00[ASN][1000 genomes]
rs809601	1.00[ASN][1000 genomes]
rs812331	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1052337	chr10:44821390-44865015	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44829000-44831400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44829000-44832200	Enhancers	Fetal Muscle Trunk	muscle
3	chr10:44829000-44833600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:44829600-44832200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr10:44829800-44831400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr10:44830000-44831400	Enhancers	Left Ventricle	heart
7	chr10:44830400-44833200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:44830400-44836600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:44830400-44839200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:44830600-44831400	Enhancers	Right Atrium	heart
11	chr10:44830600-44834800	Weak transcription	Fetal Kidney	kidney
12	chr10:44830600-44836400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:44830600-44836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:44830600-44845200	Weak transcription	Pancreas	Pancrea
15	chr10:44830800-44831400	Enhancers	Stomach Mucosa	stomach
16	chr10:44830800-44831600	Enhancers	HSMMtube	muscle
17	chr10:44830800-44841800	Weak transcription	Right Ventricle	heart
18	chr10:44831000-44831400	Enhancers	Placenta	Placenta
19	chr10:44831000-44835000	Weak transcription	Fetal Thymus	thymus
20	chr10:44831200-44833200	Enhancers	Psoas Muscle	Psoas

Quick Search: