Variant report

Variant	rs800324
Chromosome Location	chr10:44802152-44802153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1147883	1.00[ASN][1000 genomes]
rs17156150	1.00[ASN][1000 genomes]
rs1746051	1.00[ASN][1000 genomes]
rs1746053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146808	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs266080	1.00[ASN][1000 genomes]
rs266082	1.00[ASN][1000 genomes]
rs266083	1.00[ASN][1000 genomes]
rs2760671	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2760672	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2802478	1.00[ASN][1000 genomes]
rs2802479	1.00[ASN][1000 genomes]
rs34941677	1.00[ASN][1000 genomes]
rs35155049	1.00[ASN][1000 genomes]
rs35374150	1.00[ASN][1000 genomes]
rs549054	1.00[ASN][1000 genomes]
rs702363	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71491034	1.00[ASN][1000 genomes]
rs768676	1.00[ASN][1000 genomes]
rs7918766	1.00[ASN][1000 genomes]
rs800309	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800318	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800320	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs800327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs808972	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs809601	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs810236	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs812331	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44797400-44806000	Weak transcription	Fetal Heart	heart
3	chr10:44797400-44806200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:44797400-44806200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44797800-44806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:44797800-44806200	Weak transcription	Pancreas	Pancrea
7	chr10:44798000-44806000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:44799800-44806000	Weak transcription	Right Ventricle	heart
9	chr10:44801200-44802600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:44801400-44802400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:44801400-44802400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:44801400-44802400	Enhancers	NHDF-Ad	bronchial
13	chr10:44801400-44802600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:44801400-44802600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:44801600-44802200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:44801600-44802200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:44801600-44802200	Enhancers	HSMM	muscle
18	chr10:44801600-44802400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:44801600-44802400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:44801600-44802400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:44801600-44802400	Enhancers	Aorta	Aorta
22	chr10:44801600-44802400	Enhancers	Psoas Muscle	Psoas
23	chr10:44801600-44802400	Enhancers	Right Atrium	heart
24	chr10:44801600-44802400	Enhancers	HSMMtube	muscle
25	chr10:44801600-44802400	Enhancers	NH-A	brain
26	chr10:44801600-44802400	Enhancers	NHLF	lung
27	chr10:44801800-44804600	Enhancers	GM12878-XiMat	blood
28	chr10:44802000-44802200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr10:44802000-44802200	Enhancers	A549	lung
30	chr10:44802000-44802200	Flanking Active TSS	Osteobl	bone

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