Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10900012	0.91[EUR][1000 genomes]
rs11815837	0.91[EUR][1000 genomes]
rs11819122	0.91[EUR][1000 genomes]
rs12249837	0.91[EUR][1000 genomes]
rs12264159	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266055	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12268863	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17155389	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155453	0.91[EUR][1000 genomes]
rs17155463	0.91[EUR][1000 genomes]
rs17155474	0.91[EUR][1000 genomes]
rs17155478	0.91[EUR][1000 genomes]
rs17155512	0.91[EUR][1000 genomes]
rs2146808	1.00[CEU][hapmap]
rs2760672	1.00[CEU][hapmap]
rs55823236	0.91[EUR][1000 genomes]
rs702363	1.00[CEU][hapmap]
rs7075227	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138238	0.91[EUR][1000 genomes]
rs74138240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7906325	1.00[EUR][1000 genomes]
rs800316	1.00[CEU][hapmap]
rs800318	1.00[CEU][hapmap]
rs800320	1.00[CEU][hapmap]
rs808972	1.00[CEU][hapmap]
rs809601	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3329919	chr10:44687125-44688079	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3495618	chr10:44687187-44688038	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	esv3495729	chr10:44687187-44688038	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:44682800-44688600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:44684800-44687400	Weak transcription	HepG2	liver
5	chr10:44686800-44692000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:44687000-44687600	Enhancers	NHDF-Ad	bronchial
7	chr10:44687000-44692000	Enhancers	Colon Smooth Muscle	Colon
8	chr10:44687200-44687400	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44687200-44690400	Weak transcription	HSMM	muscle

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