Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44185406..44187428-chr10:44683706..44685652,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10900012	0.82[EUR][1000 genomes]
rs11815837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249837	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264159	0.91[EUR][1000 genomes]
rs12266055	0.91[EUR][1000 genomes]
rs12268863	0.82[EUR][1000 genomes]
rs17155389	0.91[EUR][1000 genomes]
rs17155453	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155463	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155474	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155478	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155512	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2146808	1.00[CEU][hapmap]
rs2760672	1.00[CEU][hapmap]
rs55823236	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs702363	1.00[CEU][hapmap]
rs7075227	0.91[EUR][1000 genomes]
rs74138238	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138240	0.91[EUR][1000 genomes]
rs7893354	0.91[EUR][1000 genomes]
rs7906325	0.91[EUR][1000 genomes]
rs7919208	0.96[AFR][1000 genomes]
rs800316	1.00[CEU][hapmap]
rs800318	1.00[CEU][hapmap]
rs800320	1.00[CEU][hapmap]
rs808972	1.00[CEU][hapmap]
rs809601	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44676000-44688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:44676400-44690600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:44680400-44687000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:44682600-44687000	Weak transcription	NHDF-Ad	bronchial
5	chr10:44682800-44688600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:44684200-44684800	Enhancers	HepG2	liver

Quick Search: