Variant report

Variant	rs7906325
Chromosome Location	chr10:44705019-44705020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10900012	0.91[EUR][1000 genomes]
rs11815837	0.91[EUR][1000 genomes]
rs11819122	0.91[EUR][1000 genomes]
rs12249837	0.91[EUR][1000 genomes]
rs12264159	1.00[EUR][1000 genomes]
rs12266055	1.00[EUR][1000 genomes]
rs12268863	0.91[EUR][1000 genomes]
rs17155389	1.00[EUR][1000 genomes]
rs17155453	0.91[EUR][1000 genomes]
rs17155463	0.91[EUR][1000 genomes]
rs17155474	0.91[EUR][1000 genomes]
rs17155478	0.91[EUR][1000 genomes]
rs17155512	0.91[EUR][1000 genomes]
rs2146808	1.00[CEU][hapmap]
rs2760672	1.00[CEU][hapmap]
rs55823236	0.91[EUR][1000 genomes]
rs702363	1.00[CEU][hapmap]
rs7075227	1.00[EUR][1000 genomes]
rs7078717	0.90[AFR][1000 genomes]
rs74138238	0.91[EUR][1000 genomes]
rs74138240	1.00[EUR][1000 genomes]
rs7893354	1.00[EUR][1000 genomes]
rs7905762	0.90[AFR][1000 genomes]
rs7906119	0.90[AFR][1000 genomes]
rs7919808	0.80[AFR][1000 genomes]
rs800316	1.00[CEU][hapmap]
rs800318	1.00[CEU][hapmap]
rs800320	1.00[CEU][hapmap]
rs808972	1.00[CEU][hapmap]
rs809601	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
2	chr10:44701200-44705400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:44701200-44705400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:44702000-44705200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:44703000-44705800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44703400-44705600	Enhancers	HepG2	liver
7	chr10:44704400-44705600	Enhancers	Ovary	ovary
8	chr10:44704400-44705800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:44704600-44705600	Enhancers	Fetal Muscle Leg	muscle
10	chr10:44704600-44705800	Enhancers	Fetal Heart	heart
11	chr10:44704600-44706000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:44705000-44705800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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