Variant report

Variant	rs7919808
Chromosome Location	chr10:44731053-44731054
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17155510	0.85[AMR][1000 genomes]
rs17155572	0.85[AMR][1000 genomes]
rs57454918	1.00[ASN][1000 genomes]
rs61856370	1.00[ASN][1000 genomes]
rs61856371	1.00[ASN][1000 genomes]
rs7078717	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72788737	0.80[AFR][1000 genomes]
rs7905762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906119	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906325	0.80[AFR][1000 genomes]
rs7906368	0.80[AFR][1000 genomes]
rs7911498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913299	0.80[AFR][1000 genomes]
rs7917497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44728000-44734200	Enhancers	Placenta	Placenta
2	chr10:44728200-44731400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44728400-44734800	Enhancers	HepG2	liver
4	chr10:44728600-44731400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:44729600-44737800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44730200-44731400	Weak transcription	K562	blood
7	chr10:44730200-44733800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:44730200-44741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:44730400-44731400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:44730400-44732000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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