Variant report

Variant	rs7906119
Chromosome Location	chr10:44728447-44728448
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17155510	0.85[AMR][1000 genomes]
rs17155572	0.85[AMR][1000 genomes]
rs7078717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7905762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906325	0.90[AFR][1000 genomes]
rs7919808	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44723000-44729800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:44727400-44728600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:44727600-44728800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:44727600-44728800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:44727600-44729000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:44728000-44728800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:44728000-44730200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:44728000-44734200	Enhancers	Placenta	Placenta
9	chr10:44728200-44728800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:44728200-44730200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:44728200-44731400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:44728400-44728600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:44728400-44729000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr10:44728400-44730600	Enhancers	Fetal Stomach	stomach
15	chr10:44728400-44734800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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