Variant report

Variant	rs7078717
Chromosome Location	chr10:44707051-44707052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17155510	0.85[AMR][1000 genomes]
rs17155572	0.85[AMR][1000 genomes]
rs7905762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7906325	0.90[AFR][1000 genomes]
rs7919808	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44705800-44707200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:44705800-44707400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:44706200-44710400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:44706800-44707400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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