Variant report

Variant	rs7911498
Chromosome Location	chr10:44781924-44781925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1436927	0.86[YRI][hapmap]
rs17155986	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs2862116	0.91[ASW][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs57454918	1.00[ASN][1000 genomes]
rs61856370	1.00[ASN][1000 genomes]
rs61856371	1.00[ASN][1000 genomes]
rs7080846	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095199	0.91[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899763	1.00[AMR][1000 genomes]
rs7905099	1.00[AMR][1000 genomes]
rs7917497	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919808	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777200-44782800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:44777200-44782800	Weak transcription	Lung	lung
3	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
4	chr10:44779400-44787600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:44779400-44787800	Weak transcription	Brain Germinal Matrix	brain
6	chr10:44780000-44783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:44780000-44788000	Weak transcription	Pancreas	Pancrea
8	chr10:44780400-44782800	Weak transcription	Left Ventricle	heart
9	chr10:44780400-44787600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:44780600-44784400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44781200-44783200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:44781600-44783800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:44781800-44782000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:44781800-44782200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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