Variant report

Variant	rs2862116
Chromosome Location	chr10:44795943-44795944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44795472..44799365-chr10:44803832..44806502,4	MCF-7	breast:
2	chr10:44689310..44690941-chr10:44794832..44796447,2	MCF-7	breast:
3	chr10:44753173..44755247-chr10:44795371..44798195,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1111259	1.00[CHB][hapmap]
rs12240817	1.00[CHB][hapmap]
rs12246602	1.00[CHB][hapmap]
rs1370158	1.00[CHB][hapmap]
rs1436927	0.86[YRI][hapmap]
rs1436931	1.00[CHB][hapmap]
rs17155986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836982	1.00[CHB][hapmap]
rs2028102	1.00[CHB][hapmap]
rs2118162	1.00[CHB][hapmap]
rs2476351	1.00[CHB][hapmap]
rs2505740	1.00[CHB][hapmap]
rs2505743	1.00[CHB][hapmap]
rs61856370	1.00[EUR][1000 genomes]
rs61856371	1.00[EUR][1000 genomes]
rs61856380	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095199	0.91[YRI][hapmap]
rs7911498	0.84[AFR][1000 genomes]
rs977754	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44789200-44796600	Weak transcription	Fetal Brain Female	brain
2	chr10:44790600-44796600	Weak transcription	Aorta	Aorta
3	chr10:44791200-44796000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:44791200-44796000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44791200-44796600	Weak transcription	Left Ventricle	heart
6	chr10:44791200-44796800	Weak transcription	Gastric	stomach
7	chr10:44791200-44805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44791400-44796000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:44791400-44796000	Weak transcription	GM12878-XiMat	blood
10	chr10:44791400-44796200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:44791400-44796200	Weak transcription	Brain Anterior Caudate	brain
12	chr10:44791400-44796200	Weak transcription	Brain Substantia Nigra	brain
13	chr10:44791400-44796400	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:44791600-44796000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:44791600-44796000	Weak transcription	NH-A	brain
16	chr10:44791600-44796200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:44791600-44796200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:44791600-44796800	Weak transcription	Right Ventricle	heart
19	chr10:44792200-44796600	Weak transcription	Brain Angular Gyrus	brain
20	chr10:44792400-44796000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:44793800-44796200	Weak transcription	Fetal Heart	heart
22	chr10:44794400-44796600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:44794400-44799000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:44794800-44798000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr10:44795000-44796400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:44795000-44797800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:44795200-44797400	Enhancers	NHEK	skin
28	chr10:44795200-44797800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr10:44795400-44797400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:44795400-44797400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:44795400-44797400	Enhancers	HSMM	muscle
32	chr10:44795400-44797600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:44795400-44797600	Enhancers	NHDF-Ad	bronchial
34	chr10:44795400-44798000	Enhancers	Fetal Muscle Leg	muscle
35	chr10:44795600-44797400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr10:44795600-44797400	Enhancers	A549	lung
37	chr10:44795600-44797600	Enhancers	HSMMtube	muscle
38	chr10:44795600-44797600	Enhancers	NHLF	lung
39	chr10:44795600-44797800	Enhancers	Osteobl	bone
40	chr10:44795600-44798000	Enhancers	Fetal Muscle Trunk	muscle
41	chr10:44795800-44797400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:44795800-44798000	Enhancers	Brain Germinal Matrix	brain

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