Variant report

Variant	rs2476351
Chromosome Location	chr10:44820157-44820158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44810814..44813598-chr10:44820060..44822931,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1111259	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11239000	1.00[ASN][1000 genomes]
rs1144483	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs1144484	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs12240817	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12246602	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1370158	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1436931	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17155986	1.00[CHB][hapmap]
rs1836982	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1898317	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898318	0.85[ASN][1000 genomes]
rs1898319	0.86[EUR][1000 genomes]
rs2028102	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2118162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2457481	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505735	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2505736	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs2505737	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2505738	0.85[EUR][1000 genomes]
rs2505739	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2505740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505743	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2862116	1.00[CHB][hapmap]
rs56179443	0.89[ASN][1000 genomes]
rs61856385	0.89[ASN][1000 genomes]
rs72790834	1.00[ASN][1000 genomes]
rs7915618	0.89[ASN][1000 genomes]
rs977754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44806600-44820800	Weak transcription	Right Atrium	heart
2	chr10:44807200-44822200	Weak transcription	Left Ventricle	heart
3	chr10:44807600-44820800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:44816600-44821200	Weak transcription	Fetal Heart	heart
5	chr10:44819400-44822400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:44819800-44820200	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr10:44820000-44820200	Enhancers	Duodenum Mucosa	Duodenum
8	chr10:44820000-44820200	Enhancers	Right Ventricle	heart
9	chr10:44820000-44820200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr10:44820000-44821000	Enhancers	Gastric	stomach
11	chr10:44820000-44821200	Enhancers	Fetal Intestine Small	intestine
12	chr10:44820000-44821200	Enhancers	Small Intestine	intestine
13	chr10:44820000-44821400	Enhancers	Fetal Intestine Large	intestine
14	chr10:44820000-44822200	Enhancers	HepG2	liver
15	chr10:44820000-44822400	Enhancers	Stomach Mucosa	stomach
16	chr10:44820000-44823000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:44820000-44823200	Enhancers	Pancreas	Pancrea

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